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Table 1 Estimated numbers of sugar transporters in three parasitic plant transcriptomes and the Mimulus genome. For each group of sugar transporters, the percentage of sequences is given for each taxon on the phylogenetic trees in Figs. 1, 2, 3, 4 and 5 and Additional files 1, 2, 3, 4 and 5. Please note that the percentages calculated in this table are the percentages of only the sequences found in the phylogenetic trees. In the table, “outliers” refer to sequences that were eliminated during the part of the curation phase in which preliminary neighbor-joining trees were made to detect sequences that were on branches longer than 0.3 when related branches had length of under 0.1; these outlier sequences were on branches longer than 0.3

From: Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

 

Phelipanche aegyptiaca

Striga hermonthica

Triphysaria versicolor

Mimulus guttatus

#

% of Total on Tree

#

% of Total on Tree

#

% of Total on Tree

#

% of Total on Tree

ERD6

5

14.71%

8

12.12%

6

9.52%

6

13.04%

pGLT_SGB

2

5.88%

2

3.03%

3

4.76%

4

8.70%

INT

3

8.82%

7

10.61%

3

4.76%

6

13.04%

TMT

6

17.65%

2

3.03%

3

4.76%

4

8.70%

PMT

7

20.59%

20

30.30%

23

36.51%

7

15.22%

VGT

2

5.88%

2

3.03%

3

4.76%

2

4.35%

STP

9

26.47%

25

37.88%

22

34.92%

17

36.96%

Total MST on Tree

34

 

66

 

63

 

46

 

MST Isoforms and Outliers

80

 

162

 

174

 

23

 

SUT1

2

50.00%

5

55.56%

3

60.00%

2

50.00%

SUT2

1

25.00%

1

11.11%

1

20.00%

1

25.00%

SUT4

1

25.00%

3

33.33%

1

20.00%

1

25.00%

Total SUT on Tree

4

 

9

 

5

 

4

 

SUT Isoforms and Outliers

7

 

11

 

10

 

0

 

SWEET Clade I

8

57.14%

8

32.00%

5

38.46%

10

34.48%

SWEET Clade II

0

0.00%

5

20.00%

3

23.08%

3

10.34%

SWEET Clade III

6

42.86%

10

40.00%

5

38.46%

14

48.28%

SWEET Clade IV

0

0.00%

2

8.00%

0

0.00%

2

6.90%

Total SWEET on Tree

14

 

25

 

13

 

29

 

Other SWEET Isoforms and Outliers

3

 

6

 

1

 

5