Table 7 List of genes (gene ID and name) annotated for single nucleotide polymorphism (SNP) loci conferring resistance to Fusarium head blight (FHB). For each annotated gene, Munich Information Center for Protein Sequences (MIPS) annotation hit ID is provided
Locus associated with FHB resistance | Gene ID | Gene name | MIPS annotation hit ID | Commentsc |
|---|---|---|---|---|
1DS 6AS | Traes_1DS_BDACE1560 | Disease resistance protein | sp|Q9T048|DRL27_ARATH | Expressed in all plant parts |
Traes_1DS_F3F17A72C | Protein kinase superfamily protein | AT5G28080.2 | High expression in stem and spike (Z32, Z39, Z65) | |
Traes_1DS_205D3AC8B | Disease resistance protein CC-NBS-LRR class family | AT5G63020.1 | Highly expressed in spike (Z39) | |
Traes_1DS_4E3A925B9 | Leucine-rich repeat receptor-like protein kinase family protein | AT4G08850.1 | Expressed in all plant parts | |
Traes_6AS_318DA417A | Protein kinase | AT3G25490.1 | Only expressed in leaf (Z23, Z71), stem (Z65), and spike (Z65) | |
Qfhb.ndwp-6A a | Traes_6AL_90B062F76 | F-box/RNI-like superfamily protein | AT3G26922.1 | Highly expressed in spike (all stages) |
Traes_6AL_8A5E06C77 | LRR receptor-like serine/threonine-protein kinase | UniRef90_M8CZR7 | Expressed in all plant parts except root | |
Traes_6AL_1B43FE620 | Lysine-specific histone demethylase 1 homolog 3 | sp|Q9CAE3|LDL3_ARATH | Highest expression in spike (Z32 and Z65) | |
Traes_6AL_8BA1FF8B2 | NAC domain containing protein 2 | AT5G04410.1 | Expressed in all plant parts | |
Traes_6AL_F759812CF | Acyl-CoA-binding domain-containing protein 4 | sp|Q9MA55|ACBP4_ARATH | Expressed in all plant parts | |
7BS | -b | – | – | – |
1DL | Traes_1DL_63D5C4C8E | Histone deacetylase | AT5G22650.1 | Highly expressed in root, stem, and spike (Z65) |
2AL | Traes_2AL_57CC2BFDD | dihydroflavonol 4-reductase | AT5G42800.1 | Only expressed in grain (Z71) |
Traes_2AL_3341560A9 | ATP binding protein | UniRef90_UPI0002BC9F6D | Highly expressed in grain (Z85) | |
Traes_2AL_D4EED56CE | histone-lysine N-methyltransferase | AT3G21820.1 | Highly expressed in grain (Z85) | |
Traes_2AL_B01F4C113 | polymerase delta 4 | AT1G09815.1 | Highly expressed in grain (Z75) | |
2DL | Traes_2DL_2249C5E82 | Regulator of chromosome condensation RCC1 family protein | AT5G63860.1 | Highest expression in spike (Z65) |
6DS | Traes_6DS_352313CDF | glutathione synthetase 2 | AT5G27380.1 | Expressed in all parts |
Traes_6DS_A9E719CC8 | Pentatricopeptide repeat-containing protein | sp|Q9SVH0|PP329_ARATH | Highly expressed in spike (Z32) | |
Traes_6DS_E0FD61378 | Unknown | UniRef90_UPI000234F957 | Highly expressed in spike (Z32) | |
Traes_6DS_C9398DB9C | Synaptotagmin-5 | sp|O00445|SYT5_HUMAN | Only expressed in spike (Z65) | |
Traes_6DS_78871A7EA | 26S protease regulatory subunit 7 homolog A | sp|Q9SSB5|PRS7A_ARATH | Expressed in all parts | |
Traes_6DS_762984823 | S-adenosylmethionine synthase 4 | sp|Q4LB21|METK4_HORVU | Highly expressed in grain (Z85) | |
7AL | Traes_7AL_13DE4FF55 | Lipase 1 | sp|P17573|LIP1_GEOCN | Highly expressed in leaf and spike (Z65) |
Traes_7AL_677F233CE | F-box domain containing protein | UniRef90_Q7G5F5 | Highly expressed in spike and grain (all stages) | |
Traes_7AL_F60FF74CA | Rer1 family protein | AT4G39220.1 | Expressed in all plant parts | |
Traes_7AL_89E0BA362 | Peptidyl-prolyl cis-trans isomerase B | sp|Q9TW32|PPIB_DICDI | Expressed in all plant parts | |
Traes_7AL_C501CCF17 | Similar to RCD (ribose catalytic domain) one 1 | AT2G35510.1 | Highly expressed in spike and grain (all stages) | |
Traes_7AL_530CAE15B | mitogen-activated protein kinase | AT5G19010.1 | Expressed in all plant parts | |
Traes_7AL_99483DCCC | Mitochondrial substrate carrier family protein | AT2G46320.1 | Highly expressed in grain (Z85) | |
Traes_7AL_6599B5B49 | Disease resistance protein | sp|Q9T048|DRL27_ARATH | Expressed in all plant parts and spike (Z65) | |
Traes_7AL_52779A5E2 | nodulin MtN21 /EamA-like transporter family protein | AT3G45870.1 | Expressed in all plant parts | |
Traes_7AL_D45376F32 | myb-like transcription factor family protein | AT3G25790.1 | Highly expressed in stem and spike (all stages) | |
Traes_7AL_2279551BA | putative type 1 membrane protein | AT3G24160.1 | Expressed in all plant parts | |
Traes_7AL_8895EDF48 | Glycosyltransferase family 61 protein | AT3G18180.1 | Expressed in all plant parts | |
Traes_7AL_8CDD7A174 | UDP-sugar pyrophosphorylase | AT5G52560.1 | Expressed in all plant parts | |
Traes_7AL_F45599D0D | histone acetyltransferase of the CBP family 12 | AT1G16710.1 | Expressed in all plant parts | |
Traes_7AL_432085C4D1 | exocyst subunit exo70 family protein G1 | AT4G31540.1 | Highest expression in spike (Z65) | |
Traes_7AL_8783C1471 | Zinc finger protein | sp|Q9C9A9|COL7_ARATH | Highly expressed in spike (Z65) and grain | |
Traes_7AL_7B680A58E | Leucine-rich repeat receptor-like protein kinase | AT2G33170.1 | Expressed in all parts |