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Table 1 A summary of the transcriptome sequencing and assembly results in the fall dormant (FDT) and non-dormant (NDT) alfalfa roots

From: How fall dormancy benefits alfalfa winter-survival? Physiologic and transcriptomic analyses of dormancy process

 

Sample

Total Number

Total Length (bp)

Ave Length (bp)

N50 (bp)

Raw reads

FDT

90,343,369

   

NDT

138,968,136

   

Clean reads

FDT

66,297,107

   

NDT

101,048,757

   

Contig

FDT+ NDT

527,916

158,278,743

299.82

427

Transcript

FDT+ NDT

240,661

163,855,683

681

992

Unigene

FDT+ NDT

23,472

34,500,666

1470

2048

  1. Ave Length: Average length of the assembled sequence
  2. N50: The length of the contig, transcript or unigene corresponding to the sequence, which is added to 50% of the total assembled bases when the assembled sequences are sorted from long to short
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BMC Plant Biology

ISSN: 1471-2229

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