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Table 5 The summary of high confidence associated loci

From: Genome-wide association study of resistance to stripe rust (Puccinia striiformis f. sp. tritici) in Sichuan wheat

QTL name SNP Marker Chr.a Position Allele Trait -log10(P values) Marker R2 (%) Environmentsb
Qyrsicau-1AS AX-110375459 1A 55,931,144 C/T DS 3.2–4.0 7.4–8.4 MY16, CZ17, MY17
Qyrsicau-1BL.1 AX-108839316 1B 670,373,135 T/C DS 3.1–4.2 6.4–9.1 MY16, MY17, WJ17
AX-109440891 1B 670,379,326 T/A DS 3.1–4.1 6.4–7.9 MY16, MY17, WJ17
AX-109389405 1B 670,382,321 T/C DS 3.4–4.0 7–9.5 MY16, MY17, WJ17
AX-108930953 1B 670,418,012 C/T DS 3.9–4.2 8.1–10 MY16, MY17, WJ17
AX-108800083 1B 670,502,837 A/G DS 3.2–4.3 5.3–7.2 MY16, MY17, WJ17
AX-111488534 1B 670,550,099 T/C IT & DS 4.1–5.8 & 3.1–7.1 6.9–13.6 & 7.6–17.0 CZ16, MY16, CZ17, MY17, WJ17
AX-109335890 1B 670,593,327 A/C IT 3.1–4.2 5.1–8.8 CZ16, CZ17, MY17
Qyrsicau-1BL.2 AX-111471952 1B 681,682,184 A/G IT 3.0–4.4 6.7–9.7 CZ16, CZ17, MY17
Qyrsicau-3DL AX-109329567 3D 595,680,421 A/G IT 3.4–4.0 8–10.1 CZ15, CZ17, MY17
Qyrsicau-5AS* AX-111623511 5A 101,053,846 A/G IT 3.5–4.2 8.1–9.7 MY16, MY17, WJ17
Qyrsicau-5AL* AX-109907430 5A 566,772,733 T/C DS 3.0–4.4 6.1–10.4 CZ16, MY16, WJ17
Qyrsicau-5BL.1 AX-111051502 5B 554,577,408 C/T DS 3.3–4.1 6.7–9.4 MY16, MY17, WJ17
Qyrsicau-5BL.2 AX-110123238 5B 589,800,894 G/C DS 3.4–3.6 7.7–8.8 MY16, CZ17, MY17
Qyrsicau-6AS AX-108943926 6A 24,724,553 A/G DS 3.3–3.9 7.2–9.5 CZ15, MY16, MY17
Qyrsicau-6BS AX-109937061 6B 28,634,217 C/T DS 3.5–6.2 7.4–13.3 MY16, MY17, WJ17
Qyrsicau-7AS AX-109348608 7A 81,528,245 G/A IT 3.1–3.6 6.8–8.2 CZ15, CZ17, WJ17
Qyrsicau-7BL AX-110518451 7B 711,405,854 G/A IT 3.1–5.3 6.4–11.3 CZ16, CZ17, MY17
  1. achromosome
  2. bthe environments where the high confidence associated marker can be identified in
  3. * the potential novel QTL
  4. CZ15 = Chongzhou 2015, CZ16 = Chongzhou 2016, MY16 = Mianyang 2016, CZ17 = Chongzhou 2017, MY17 = Mianyang 2017, WJ17 = Wenjiang 2017