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Table 5 The summary of high confidence associated loci

From: Genome-wide association study of resistance to stripe rust (Puccinia striiformis f. sp. tritici) in Sichuan wheat

QTL name

SNP Marker

Chr.a

Position

Allele

Trait

-log10(P values)

Marker R2 (%)

Environmentsb

Qyrsicau-1AS

AX-110375459

1A

55,931,144

C/T

DS

3.2–4.0

7.4–8.4

MY16, CZ17, MY17

Qyrsicau-1BL.1

AX-108839316

1B

670,373,135

T/C

DS

3.1–4.2

6.4–9.1

MY16, MY17, WJ17

AX-109440891

1B

670,379,326

T/A

DS

3.1–4.1

6.4–7.9

MY16, MY17, WJ17

AX-109389405

1B

670,382,321

T/C

DS

3.4–4.0

7–9.5

MY16, MY17, WJ17

AX-108930953

1B

670,418,012

C/T

DS

3.9–4.2

8.1–10

MY16, MY17, WJ17

AX-108800083

1B

670,502,837

A/G

DS

3.2–4.3

5.3–7.2

MY16, MY17, WJ17

AX-111488534

1B

670,550,099

T/C

IT & DS

4.1–5.8 & 3.1–7.1

6.9–13.6 & 7.6–17.0

CZ16, MY16, CZ17, MY17, WJ17

AX-109335890

1B

670,593,327

A/C

IT

3.1–4.2

5.1–8.8

CZ16, CZ17, MY17

Qyrsicau-1BL.2

AX-111471952

1B

681,682,184

A/G

IT

3.0–4.4

6.7–9.7

CZ16, CZ17, MY17

Qyrsicau-3DL

AX-109329567

3D

595,680,421

A/G

IT

3.4–4.0

8–10.1

CZ15, CZ17, MY17

Qyrsicau-5AS*

AX-111623511

5A

101,053,846

A/G

IT

3.5–4.2

8.1–9.7

MY16, MY17, WJ17

Qyrsicau-5AL*

AX-109907430

5A

566,772,733

T/C

DS

3.0–4.4

6.1–10.4

CZ16, MY16, WJ17

Qyrsicau-5BL.1

AX-111051502

5B

554,577,408

C/T

DS

3.3–4.1

6.7–9.4

MY16, MY17, WJ17

Qyrsicau-5BL.2

AX-110123238

5B

589,800,894

G/C

DS

3.4–3.6

7.7–8.8

MY16, CZ17, MY17

Qyrsicau-6AS

AX-108943926

6A

24,724,553

A/G

DS

3.3–3.9

7.2–9.5

CZ15, MY16, MY17

Qyrsicau-6BS

AX-109937061

6B

28,634,217

C/T

DS

3.5–6.2

7.4–13.3

MY16, MY17, WJ17

Qyrsicau-7AS

AX-109348608

7A

81,528,245

G/A

IT

3.1–3.6

6.8–8.2

CZ15, CZ17, WJ17

Qyrsicau-7BL

AX-110518451

7B

711,405,854

G/A

IT

3.1–5.3

6.4–11.3

CZ16, CZ17, MY17

  1. achromosome
  2. bthe environments where the high confidence associated marker can be identified in
  3. * the potential novel QTL
  4. CZ15 = Chongzhou 2015, CZ16 = Chongzhou 2016, MY16 = Mianyang 2016, CZ17 = Chongzhou 2017, MY17 = Mianyang 2017, WJ17 = Wenjiang 2017