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Fig. 3 | BMC Plant Biology

Fig. 3

From: Identification and characterization of water chestnut Soymovirus-1 (WCSV-1), a novel Soymovirus in water chestnuts (Eleocharis dulcis)

Fig. 3

Phylogenetic tree showing the relationships between WCSV-1 and selected numbers of the Caulimoviridae family. a A phylogenetic tree was constructed based on full-length genomic sequences for WCSV-1 and other Caulimoviridae specified as virus names (abbreviation) followed by sequence accession numbers. b Phylogenetic tree based on the amino acid sequences encoded by ORF V. The phylogenetic trees were estimated using the neighbor-joining method with 1000 bootstrap replicates. Bootstrap values > 50% are shown at branch numbers. The bar represents 0.1 substitutions per site. The following abbreviations are used to indicate virus names in the phylogenetic tree analysis. BRRV, Blueberry red ringspot virus; SbCMV, Soybean chlorotic mottle virus; PCSV, Peanut chlorotic streak virus; CmYLCV, Cestrum yellow leaf curling virus; DMV-Portland, Dahlia mosaic virus-Portland; FMV, Figwort mosaic virus; CaMV-XinJiang, cauliflower mosaic virus-XinJiang; CERV, Carnation etched ring virus; BSV-GF, Banana streak virus-GF; CSSV, Cacao swollen shoot virus; ComYMV, commelina yellow mottle virus; CsVMV, Cassava vein mosaic virus; SPVCV-Dom1, Sweet potato vein clearing virus-Dom1; PVCV, Petunia vein clearing virus; RTBV-PH, Rice tungro bacilliform virus-PH. The position of WCSV-1 is indicated by the triangle

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