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Fig. 3 | BMC Plant Biology

Fig. 3

From: Proteome and transcriptome analyses reveal key molecular differences between quality parameters of commercial-ripe and tree-ripe fig (Ficus carica L.)

Fig. 3

The general profiles of RNA-Seq transcriptomes of tree-ripe (TR) and commercial-ripe (CR) Brown Turkey figs. a Venn diagram of the total mapped genes in triplicate CR and TR receptacle samples. b Volcano diagram of the distribution of CR and TR gene sets. More upregulated genes (red dots) were found than downregulated genes (blue dots). c Transcription frequency and abundance of differentially expressed gene (DEG) groups displayed as FPKM values in CR and TR. The number of genes in a group is listed to the right of the bar. d Outline of total DEGs, and analysis of GO term distribution for 2087 DEGs in Biological Process, Cellular Component and Molecular Function GO categories. Number of upregulated and downregulated DEGs is highlighted in red and green, respectively. e KEGG pathway enrichment analysis of the DEGs. Upregulated and downregulated DEGs are indicated by red and green bars, respectively, and to the right of each bar is the number of DEGs. f RNA-Seq validation and correlation analysis by real-time quantitative PCR

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