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Table 4 Functional domains identified in predicted ORFs in the Alt region

From: Identification of candidate genes responsible for the susceptibility of apple (Malus × domestica Borkh.) to Alternaria blotch

BAC clone/genome

Genea

Functional domains (InterPro)

InterPro ID

Match position (aa)

SD-178_L15

A5

NPa

A6

RX-CC_like

CD14798

10..98

Leucine-rich repeat domain superfamily

IPR32675

106..563

F-box-like domain superfamily

IPR001810

641..691

A7

NP

A8

RX-CC_like

CD14798

33..136

P-loop containing nucleoside triphosphate hydrolase

IPR027417

160..425

NB-ARC

IPR002182

173..451

Winged helix-turn-helix DNA-binding domain superfamily

IPR011991

405..487

Leucine-rich repeat domain superfamily

IPR32675

487..1393

A9

Gag-polypeptide of LTR copia-type

IPR029472

16..59

A10

RIN4, pathogenic type III effector avirulence factor Avr cleavage site

IPR008700

12..47

SD-241_O01

a1

Gag-polypeptide of LTR copia-type

IPR029472

30..70

a2

RX-CC_like

CD14798

33..136

P-loop containing nucleoside triphosphate hydrolase

IPR027417

161..425

NB-ARC

IPR002182

173..451

Winged helix-turn-helix DNA-binding domain superfamily

IPR011991

405..490

Leucine-rich repeat domain superfamily

IPR032675

487..1393

a3

Gag-polypeptide of LTR copia-type

IPR029472

16..59

a4

RIN4, pathogenic type III effector avirulence factor Avr cleavage site

IPR008700

12..47

GDDH13

G4

RX-CC_like

CD14798

123..249

P-loop containing nucleoside triphosphate hydrolase

IPR027417

275..544

NB-ARC

IPR002182

304..570

Winged helix-turn-helix DNA-binding domain superfamily

IPR011991

524..608

Leucine-rich repeat domain superfamily

IPR032675

985..1428

Receptor L-domain superfamily

IPR036941

1310..1427

RIN4, pathogenic type III effector avirulence factor Avr cleavage site

IPR008700

1439..1474

F-box-like domain superfamily

IPR036047

1532..1586

F-box domain

IPR001810

1530..1570

G5

Endonuclease/exonuclease/phosphatase superfamily

IPR036691

110..358

SWR1-complex protein 5/craniofacial development protein

IPR027124

112..406

Reverse transcriptase domain

IPR000477

621..867

G6

NP

G7

NP

G8

NP

G9

NP

G10

NP

G11

NP

G12

Endonuclease/exonuclease/phosphatase superfamily

IPR036691

94..300

SWR1-complex protein 5/craniofacial development protein

IPR027124

57..78

SWR1-complex protein 5/craniofacial development protein

IPR027124

97..298

G13

Gag-polypeptide of LTR copia-type

IPR029472

30..70

GAG-pre-integrase domain

IPR025724

268..328

G14

RX-CC_like

CD14798

33..136

P-loop containing nucleoside triphosphate hydrolase

IPR027417

161..425

NB-ARC

IPR002182

173..451

Winged helix-turn-helix DNA-binding domain superfamily

IPR011991

405..487

Leucine-rich repeat domain superfamily

IPR032675

487..1393

G15

Gag-polypeptide of LTR copia-type

IPR029472

16..59

G16

RIN4, pathogenic type III effector avirulence factor Avr cleavage site

IPR008700

12..47

  1. aNP none predicted