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Table 3 ORFs predicted in this study from BAC clones and partial genomic sequence

From: Identification of candidate genes responsible for the susceptibility of apple (Malus × domestica Borkh.) to Alternaria blotch

BAC clone/genome ORF Transcription start (bp) Transcription end (bp) Deduced amino acid length (aa) Strand Homologous protein (Species) E-value Accession no.
SD-178_L15 A1 2061 11,998 1679 + PREDICTED: putative disease resistance RPP13-like protein 1 (Malus domestica) 0.0 XP_008384572.2
A2 15,932 13,969 203 – hypothetical protein DOTSEDRAFT_19432 (Dothistroma septosporum NZE10) 0.24 EME48939.1
A3 15,987 20,894 1411 + PREDICTED: putative disease resistance RPP13-like protein 1 (Pyrus × bretschneideri) 0.0 XP_018507989.1
A4 25,096 26,511 214 + PREDICTED: uncharacterized protein LOC103409892 (Malus domestica) 5.00E-132 XP_008346905.1
A5 27,488 28,157 40 + None
A6 29,534 36,522 835 + PREDICTED: putative disease resistance protein RGA3 isoform X2 (Pyrus × bretschneideri) 0.0 XP_009379454.1
A7 43,448 45,613 168 + Hypothetical protein COA78_37210 (Blastopirellula sp.) 0.47 PHR87371.1
A8 50,640 55,659 1405 + PREDICTED: putative disease resistance RPP13-like protein 1 (Malus domestica) 0.0 XP_008366183.1
A9 55,769 57,610 296 + Uncharacterized protein LOC110755101 (Prunus avium) 1.00E-104 XP_021811957.1
A10 63,542 66,456 174 + PREDICTED: uncharacterized protein LOC103967858 isoform X1 (Pyrus × bretschneideri) 2.00E-37 XP_009379452.1
A11 71,752 74,786 650 + PREDICTED: WEB family protein At5g55860 (Malus domestica) 0.0 XP_008384579.2
SD-241_O01 a1 Not identified 3754 222 + PREDICTED: uncharacterized protein LOC108170510 (Malus domestica) 7.E-63 XP_017181004.1
a2 10,358 15,380 1405 + PREDICTED: putative disease resistance RPP13-like protein 1 (Malus domestica) 0.0 XP_008366183.1
a3 15,499 17,345 322 + Uncharacterized protein LOC110755101 (Prunus avium) 5E-132 XP_021811957.1
a4 23,336 26,622 115 + PREDICTED: uncharacterized protein LOC103967858 isoform X1 (Pyrus × bretschneideri) 1.00E-36 XP_009379452.1
a5 31,018 34,478 650 + PREDICTED: WEB family protein At5g55860 (Malus domestica) 0.0 XP_008384579.2
a6 34,684 38,521 473 + PREDICTED: uncharacterized protein LOC103447176 (Malus domestica) 0.0 XP_008384578.1
a7 44,893 39,592 324 + PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1-like (Pyrus × bretschneideri) 0.0 XP_009367226.1
a8 51,499 52,557 69 – PREDICTED: kinesin-like protein KIF1C (Lates calcarifer) 0.11 XP_018537717.1
a9 59,979 54,964 609 + PREDICTED: serine/threonine-protein kinase D6PK-like (Pyrus × bretschneideri) 0.0 XP_009367228.1
a10 60,552 63,449 152 – Pre-rRNA-processing protein TSR2-like (Prunus avium) 3.00E-66 XP_021818064.1
a11 69,641 64,724 353 – PREDICTED: DNA-directed RNA polymerases I and III subunit rpac1-like (Malus domestica) 3.00E-164 XP_008349490.1
a12 69,866 Not Identified 325 – PREDICTED: putative disease resistance RPP13-like protein 1 (Malus domestica) 0.0 XP_008384580.1
GDDH13 Chr 11 partial G1 2,740,584 2,749,771 1689 + PREDICTED: putative disease resistance RPP13-like protein 1 (Malus domestica) 0.0 XP_008384572.2
G2 2,754,217 2,752,730 125 – Putative reverse transcriptase family member (Malus domestica) 2.00E-36 CBL94165.1
G3 2,754,290 2,757,403 577 – Putative COBL7 (COBRA-LIKE 7) (Malus domestica) 0.0 CBL94184.1
G4 2,757,523 2,766,112 1770 + PREDICTED: putative disease resistance protein RGA3 isoform X2 (Pyrus × bretschneideri) 0.0 XP_009379454.1
G5 2,769,661 2,774,105 1049 + T4.15 (Malus × robusta) 0.0 CCH50976.1
G6 2,774,818 2,774,245 133 – T4.14 (Malus × robusta) 3.00E-89 CCH50975.1
G7 2,774,858 2,778,564 786 + Hypothetical protein (Malus domestica) 3.00E-149 AEJ72571.1
G8 2,778,594 2,779,821 161 + PREDICTED: uncharacterized protein LOC103420450 (Malus domestica) 8.00E-11 XP_008356739.1
G9 2,781,742 2,780,939 49 – None
G10 2,781,835 2,787,073 592 + Putative COBL7 (COBRA-LIKE 7) (Malus domestica) 1.00E-145 CBL94184.1
G11 2,787,274 2,788,139 225 + T4.14 (Malus × robusta) 2.00E-144 CCH50975.1
G12 2,791,526 2,788,282 1416 – T4.15 (Malus × robusta) 0.0 CCH50976.1
G13 2,794,998 2,799,499 430 + PREDICTED: uncharacterized protein LOC103438444 (Malus domestica) 3.00E-135 XP_017188663.1
G14 2,804,362 2,809,384 1405 + PREDICTED: putative disease resistance RPP13-like protein 1 (Malus domestica) 0.0 XP_008366183.1
G15 2,809,494 2,812,371 338 + Uncharacterized protein LOC110755101 (Prunus avium) 6.00E-100 XP_021811957.1
G16 2,817,267 2,820,181 174 + PREDICTED: uncharacterized protein LOC103967858 isoform X1 (Pyrus × bretschneideri) 2.00E-37 XP_009379452.1
G17 2,825,063 2,828,512 650 + PREDICTED: WEB family protein At5g55860 (Malus domestica) 0.0 XP_008384579.2
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BMC Plant Biology

ISSN: 1471-2229

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