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Table 1 Associations analysis detected among 15 agronomic-related traits

From: Identifying favorable alleles for improving key agronomic traits in upland cotton

Type

Traits

LociA

Physical chromosome

Physical position (Mb)

Effect for phenotype

-log PB

Known lociC

Fiber quality

FL

BNL3452

A05

3.86

0.39

4.51(d)

[59, 60]

CM0043

A08

10.80

1.64/1.79/1.64/13.22/14.28/0.09/1.31/1.53

5.80(j)/6.02(c)/5.86(f)/4.09(i)/4.60(a)/4.03(d)/5.21(b)/6.62(e)

 

NBRI_GE21415

D01

28.06

1.31/0.23/− 2.13/14.17/14.09

4.41(j)/5.01(c)/4.64(b)/4.13(e)/4.01(h)

[61]

FS

BNL2960

A10

91.23

−1.11/− 1.25

4.16(i)/4.02(h)

 

CM0043

A08

10.80

18.87/1.07/1.85

4.23(j)/4.92(e)/4.01(f)

 

NAU3201

D08

56.55

−1.15/−2.13

5.23(c)/4.14(b)

 

NBRI_GE21415

D01

28.06

1.34

4.19(b)

[61]

FE

HAU2631

A13

2.16

3.81/3.02

4.79(c)/4.49(a)

[55, 62]

NAU3084

A12

86.65

0.15

4.1(a)

 

NBRI_GE21415

D01

28.06

1.25

4.41(e)

[61]

FY

NAU2914

D08

39.43

−0.26

4.05(i)

 

NAU3291

D12

48.92

0.95/0.83

4.77(i)/4.25(j)

 

FLU

CM0043

A08

10.80

13.25/1.53

4.63(j)/5.95(c)

 

HAU2631

A13

2.16

3.51/3.96/1.55/0.24/4.51

4.78(j)/4.27(f)/5.18(i)/5.72(g)/4.20(e)

 

NAU2980

D13

59.74

−2.14/−0.66/−0.14

4.30(j)/4.07(c)/4.91(h)

 

NBRI_GE21415

D01

28.06

4.46/2.20/0.47/1.33/−1.08

5.41(c)/4.78(i)/6.16(g)/4.42(h)/5.34(j)

[61]

SCI

BNL3452

A05

3.86

8.10

4.06(d)

 

CM0043

A08

10.80

1.58/0.95/14.53/13.44/16.92

5.08(j)/5.00(c)/4.92(f)/4.63(b)/4.75(e)

 

NBRI_GE21415

D01

28.06

0.17/0.18/1.78/0.14/1.06/0.14/0.64/8.95

5.23(j)/4.91(c)/4.29(f)/4.97(i)/4.25(d)/5.02(g)/5.72(b)/4.10(e)

 

FRR

NAU3291

D12

48.92

0.92/0.70

4.72(j)/4.88(i)

 

Yield

BW

BNL3867

D12

12.51

2.18

5.06(d)

 

NAU3587

A08

0.40

−0.27

4.06(i)

 

NBRI_GE21415

D01

28.06

13.00/1.64/1.18

4.03(j)/4.82(c)/4.59(e)

[61]

LP

HAU2631

A13

2.16

3.87/4.52/3.51/0.14/0.52/1.15/1.86/4.36

4.95(j)/4.29(c)/4.46(f)/5.55(i)/6.08(g)/5.47(b)/5.16(e)/4.66(h)

 

HAU3073

D11

17.05

0.26

4.21(h)

 

SI

CM0043

A08

10.80

1.18

5.19(a)

 

SBN

BNL3408

A03

2.82

−0.51

4.25(b)

 

NAU3084

A12

86.65

−1.29

4.04(b)

 

NAU3434

D10

12.45

0.32

6.64(d)

 

Maturity

BOD

JESPR0190

D10

60.14

−2.5/−10.59/3.24

4.43(j)/5.24(f)/4.50(b)

 

NAU3201

D08

56.55

−1.76

5.18(a)

 

NBRI_GE10433

A06

92.58

2.34

4.21(i)

 

FD

JESPR0190

D10

60.14

−8.01/−3.93

5.62(f)/8.06(d)

 

NAU0874

A06

93.20

2.40

4.62(d)

[51, 52, 55]

NAU5433

A06

89.92

0.20

4.4(d)

[51, 52, 55]

Trichome

LPA

NAU0874

A06

93.20

0.18/−2.53

13.84(b)/10.49(h)

[52, 55]

NAU5433

A06

89.92

−2.31/2.61

9.63(b)/9.92(h)

[51, 52, 55]

NBRI_GE10433

A06

92.58

−3.04/−1.59

13.23(b)/10.56(h)

 

NBRI_GE18910

A06

93.75

−2.20/−0.18

7.99(b)/6.21(h)

 

SPA

NAU0874

A06

93.20

4.86/−1.97/−5.86

4.39(i)/12.59(a)/5.06(h)

[52, 55]

NAU5164

D12

40.11

0.24/0.19

4.16(g)/4.70(i)

 

NAU5433

A06

89.92

0.27/−1.72/4.58

4.84(a)/9.06(h)/5.41(i)

[51, 52, 55]

NBRI_GE10433

A06

92.58

−1.77/−5.43

13.09(a)/4.35(h)

 

NBRI_GE18910

A06

93.75

−4.47/−0.44

6.93(a)/4.95(h)

 
  1. Common markers detected in more than two traits are shown bold in A and the negative logarithm value of P of each associated marker is shown in B. Different environments: represented the environment of Anyang in 2014, Anyang in 2015, the BLUP value of Anyang in 2014 and 2015, Dunhuang in 2014, Dunhuang in 2015, the BLUP value of Dunhuang in 2014 and 2015, Jingzhou in 2014, Jingzhou in 2015, the BLUP value of Jingzhou in 2014 and 2015, the BLUP value of 6 environments, respectively. C shows a comparison between trait-marker associations identified in this study and QTLs identified in previous studies
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BMC Plant Biology

ISSN: 1471-2229

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