Table 1 Over-represented GO categories of DATs during infection for “Biological Process” ontology (Fisher’s exact test with P < 0.05)
From: Mal de Río Cuarto virus infection causes hormone imbalance and sugar accumulation in wheat leaves
GO ID | Term | Annotated | Significant | Expected | classicFisher |
|---|---|---|---|---|---|
GO categories of increased DATs | |||||
GO:0006412 | Translation | 1624 | 257 | 42.09 | < 1e-30 |
GO:0030244 | Cellulose biosynthetic process | 117 | 22 | 3.03 | 3.4e-13 |
GO:0006414 | Translational elongation | 121 | 20 | 3.14 | 4.7e-11 |
GO:0034975 | Protein folding in endoplasmic reticulum | 6 | 6 | 0.16 | 3.0e-10 |
GO:0007017 | Microtubule-based process | 366 | 30 | 9.49 | 1.1e-08 |
GO:0006457 | Protein folding | 346 | 42 | 8.97 | 3.6e-08 |
GO:0007010 | Cytoskeleton organization | 322 | 21 | 8.35 | 5.3e-08 |
GO:0042026 | Protein refolding | 32 | 9 | 0.83 | 8.4e-08 |
GO:0030245 | Cellulose catabolic process | 60 | 11 | 1.56 | 3.6e-07 |
GO:0031408 | Oxylipin biosynthetic process | 47 | 9 | 1.22 | 2.9e-06 |
GO:0006564 | L-serine biosynthetic process | 17 | 6 | 0.44 | 2.9e-06 |
GO:0006165 | Nucleoside diphosphate phosphorylation | 186 | 12 | 4.82 | 1.9e-05 |
GO:0006183 | GTP biosynthetic process | 14 | 5 | 0.36 | 1.9e-05 |
GO:0006228 | UTP biosynthetic process | 14 | 5 | 0.36 | 1.9e-05 |
GO:0006167 | AMP biosynthetic process | 14 | 4 | 0.36 | 6.8e-05 |
GO:0042254 | Ribosome biogenesis | 269 | 22 | 6.97 | 7.8e-05 |
GO:0006166 | Purine ribonucleoside salvage | 5 | 3 | 0.13 | 0.00017 |
GO:0006555 | Methionine metabolic process | 46 | 8 | 1.19 | 0.00032 |
GO:0000028 | Ribosomal small subunit assembly | 6 | 3 | 0.16 | 0.00033 |
GO categories of decreased DATs | |||||
GO:0045454 | Cell redox homeostasis | 379 | 37 | 5.96 | 1.4e-18 |
GO:0005992 | Trehalose biosynthetic process | 56 | 11 | 0.88 | 1.1e-09 |
GO:0019538 | Protein metabolic process | 11,517 | 136 | 181.11 | 1.1e-07 |
GO:0006809 | Nitric oxide biosynthetic process | 9 | 5 | 0.14 | 1.1e-07 |
GO:1904143 | Positive regulation of carotenoid biosynthesis | 9 | 5 | 0.14 | 1.1e-07 |
GO:0048577 | Negative regulation of short-day photoperiodism, flowering | 9 | 5 | 0.14 | 1.1e-07 |
GO:0015798 | Myo-inositol transport | 6 | 4 | 0.09 | 8.9e-07 |
GO:0009691 | Cytokinin biosynthetic process | 37 | 7 | 0.58 | 1.6e-06 |
GO:1902348 | Cellular response to strigolactone | 3 | 3 | 0.05 | 3.9e-06 |
GO:0042128 | Nitrate assimilation | 17 | 5 | 0.27 | 5.0e-06 |
GO:0016573 | Histone acetylation | 61 | 8 | 0.96 | 5.1e-06 |
GO:0008643 | Carbohydrate transport | 151 | 12 | 2.37 | 5.3e-06 |
GO:0008654 | Phospholipid biosynthetic process | 148 | 9 | 2.33 | 2.2e-05 |
GO:1901562 | Response to paraquat | 5 | 3 | 0.08 | 3.8e-05 |
GO:0019375 | Galactolipid biosynthetic process | 5 | 3 | 0.08 | 3.8e-05 |
GO:0071492 | Cellular response to UV-A | 6 | 3 | 0.09 | 7.5e-05 |
GO:0006021 | Inositol biosynthetic process | 6 | 3 | 0.09 | 7.5e-05 |
GO:0009585 | Red, far-red light phototransduction | 17 | 4 | 0.27 | 0.00012 |
GO:0009584 | Detection of visible light | 8 | 3 | 0.13 | 0.00020 |
GO:0006821 | Chloride transport | 35 | 5 | 0.55 | 0.00021 |