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Table 1 Summary statistics based on the RNA-seq data

From: Comparative transcriptome analysis reveals significant differences in the regulation of gene expression between hydrogen cyanide- and ethylene-treated Arabidopsis thaliana

Items

CK1

CK2

CK3

ET1

ET2

ET3

HCN1

HCN2

HCN3

Total Reads Count (#)

51,411,652

50,093,432

52,262,894

52,902,026

55,269,380

52,933,184

50,501,232

52,499,638

49,344,474

Total Bases Count (kp)

6,426,456.5

6,261,679

6,532,861.75

6,612,753.25

6,908,672.5

6,616,648

6,312,654

6,562,454.75

6,168,059.25

Average Read Length (bp)

125

125

125

125

125

125

125

125

125

Good sequences (#)

51,125,475

49,799,559

51,981,493

52,585,313

54,966,768

52,636,272

50,195,794

52,200,589

49,021,051

Good ratio (%)

99.44

99.41

99.46

99.4

99.45

99.44

99.4

99.43

99.34

Q30 Bases Ratio (%)

91.20

91.13

91.25

91.18

91.05

90.96

91.03

90.86

90.88

Q20 Bases Ratio (%)

95.72

95.67

95.76

95.70

95.65

95.60

95.62

95.55

95.53

GC Bases Ratio (%)

45.69

45.70

45.78

46.00

45.89

45.77

46.09

46.02

45.89

Total mapped

47,985,088 (94.31%)

46,340,714 (93.52%)

48,339,117 (93.42%)

48,925,996 (93.53%)

51,215,376 (93.62%)

49,011,714 (93.57%)

46,807,186 (93.74%)

49,092,621 (94.50%)

45,873,876 (94.11%)

Unique mapped

47,004,223 (92.38%)

45,813,306 (92.46%)

47,788,558 (92.36%)

48,310,664 (92.36%)

50,594,553 (92.49%)

48,390,954 (92.38%)

46,222,496 (92.57%)

48,488,187 (93.34%)

45,300,714 (92.93%)