Table 1 Statistical analysis of RNA-Seq reads for two samples with three biological repeats in Prunus mume
Samples | Raw reads | Adaptor | Tags containing N | Low reads | Clean Q20 | Clean Q30 | Total clean reads | Total base | Clean base |
|---|---|---|---|---|---|---|---|---|---|
QJN2 1 | 141,145,838 100% | 47,712 0.03% | 22,104 0.02% | 6,435,219 4.56% | 98.16% | 94.10% | 130,341,396 92.35% | 21,171,875,700 100% | 19,015,769,884 89.82% |
QJN2 2 | 128,163,744 100% | 38,212 0.03% | 20,262 0.02% | 6,490,668 5.06% | 98.00% | 93.65% | 117,374,938 91.58% | 19,224,561,600 100% | 17,137,520,826 89.14% |
QJN2 3 | 141,878,002 100% | 70,877 0.05% | 22,413 0.02% | 8,245,720 5.81% | 97.89% | 93.36% | 127,996,438 90.22% | 21,281,700,300 100% | 18,697,953,589 87.86% |
DY 1 | 117,067,752 100% | 31,995 0.03% | 17,947 0.02% | 8,528,818 7.28% | 97.39% | 91.61% | 103,843,854 88.70% | 17,560,162,800 100% | 15,329,287,829 87.30% |
DY 2 | 97,850,702 100% | 24,979 0.03% | 15,582 0.02% | 6,029,934 6.16% | 97.89% | 93.40% | 87,680,252 89.61% | 14,677,605,300 100% | 12,921,865,985 88.04% |
DY 3 | 105,778,662 100% | 55,748 0.05% | 16,686 0.02% | 6,128,352 5.79% | 97.90% | 93.43% | 95,474,624 90.26% | 15,866,799,300 100% | 13,940,388,181 87.86% |