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Table 1 Statistical analysis of RNA-Seq reads for two samples with three biological repeats in Prunus mume

From: Genome-wide discovery and characterization of flower development related long non-coding RNAs in Prunus mume

Samples Raw reads Adaptor Tags containing N Low reads Clean Q20 Clean Q30 Total clean reads Total base Clean base
QJN2 1 141,145,838
100%
47,712
0.03%
22,104
0.02%
6,435,219
4.56%
98.16% 94.10% 130,341,396
92.35%
21,171,875,700
100%
19,015,769,884
89.82%
QJN2 2 128,163,744
100%
38,212
0.03%
20,262
0.02%
6,490,668
5.06%
98.00% 93.65% 117,374,938
91.58%
19,224,561,600
100%
17,137,520,826
89.14%
QJN2 3 141,878,002
100%
70,877
0.05%
22,413
0.02%
8,245,720
5.81%
97.89% 93.36% 127,996,438
90.22%
21,281,700,300
100%
18,697,953,589
87.86%
DY 1 117,067,752
100%
31,995
0.03%
17,947
0.02%
8,528,818
7.28%
97.39% 91.61% 103,843,854
88.70%
17,560,162,800
100%
15,329,287,829
87.30%
DY 2 97,850,702
100%
24,979
0.03%
15,582
0.02%
6,029,934
6.16%
97.89% 93.40% 87,680,252
89.61%
14,677,605,300
100%
12,921,865,985
88.04%
DY 3 105,778,662
100%
55,748
0.05%
16,686
0.02%
6,128,352
5.79%
97.90% 93.43% 95,474,624
90.26%
15,866,799,300
100%
13,940,388,181
87.86%