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Table 3 Stress-induced DMGs involved in metabolism processes and their demethylated types in soybean

From: High-resolution DNA methylome reveals that demethylation enhances adaptability to continuous cropping comprehensive stress in soybean

Abbreviation

Full name of enzyme

Gene name in Soybean

DMG Type

HK

hexokinase [EC:2.7.1.1]

Glyma07g12190

CG

GPI

glucose-6-phosphate isomerase [EC:5.3.1.9]

Glyma19g02031

CHG

PFK

6-phosphofructokinase 1 [EC:2.7.1.11]

Glyma18g22780

CHG

aceE

pyruvate dehydrogenase E1 component [EC:1.2.4.1]

Glyma07g03930; Glyma17g03560

CHG; CHG

CS

citrate synthase [EC:2.3.3.1]

Glyma18g12393

CHG

IDH

isocitrate dehydrogenase [EC:1.1.1.42]

Glyma08g17080

CHG

OGDH

2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]

Glyma17g03560

CG/CHG; CHG

ACACA

acetyl-CoA carboxylase [EC:6.4.1.2 6.3.4.14 2.1.3.15]

Glyma04g11550

CHG

fabD

[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]

Glyma18g06500

CG

ALT

alanine transaminase [EC:2.6.1.2]

Glyma02g04320

CG

glyA

glycine hydroxymethyltransferase [EC:2.1.2.1]

Glyma18g27710

CHG

GLDC

glycine dehydrogenase [EC:1.4.4.2]

Glyma17g34690

CG

AMT

aminomethyltransferase [EC:2.1.2.10]

Glyma15g11590

CG

cysK

cysteine synthase A [EC:2.5.1.47]

Glyma02g15640; Glyma15g41600

CHG; CHG

metE

5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase [EC:2.1.1.14]

Glyma17g23730

CHG

DNMT1

DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]

Glyma11g08861; Glyma01g01120; Glyma16g17720

CHG; CG; CG/CHG

OTC

ornithine carbamoyltransferase [EC:2.1.3.3]

Glyma06g03361

CG

GSR

glutathione reductase (NADPH) [EC:1.8.1.7]

Glyma02g08180

CHG

FNR

ferredoxin-NADP(+) reductase [EC 1.18.1.2]

Glyma08g17080

CHG