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Table 2 Sequence depth and coverage statistics

From: A high-density genetic map of Schima superba based on its chromosomal characteristics

Sample

Clean readsa

Mapped readsb

Mapping ratec

Average depthd

Coverage 1 × e

Coverage 4 × f

LC31

37,926,886

33,865,915

89.29%

41.50

80.12%

60.34%

JO32

50,742,572

49,233,750

97.03%

48.74

99.96%

90.55%

  1. a Number of reads used for the alignment
  2. b Number of clean reads that mapped to the reference genome
  3. c The percentage of reads that mapped to the genome
  4. d Average sequencing depth
  5. e Percentage of the reference genome with at least 1× coverage
  6. f Percentage of the reference genome with at least 4× coverage
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BMC Plant Biology

ISSN: 1471-2229

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