Comparative transcriptome analysis reveals gene network regulating cadmium uptake and translocation in peanut roots under iron deficiency

Chen, Chu; Cao, Qiqi; Jiang, Qun; Li, Jin; Yu, Rugang; Shi, Gangrong

doi:10.1186/s12870-019-1654-9

Table 3 DEGs possibly involved in metal transport in Fe-sufficient and Fe-deficient peanut plants exposed to 0 or 2 μM CdCl₂ for seven days

From: Comparative transcriptome analysis reveals gene network regulating cadmium uptake and translocation in peanut roots under iron deficiency

Gene_ID	Gene description	Abbr.	Fe0vsFe50		Fe50CdvsFe50		Fe0CdvsFe50		Fe0CdvsFe0		Fe0CdvsFe50Cd
Gene_ID	Gene description	Abbr.	log2Fold Change	padj	log2Fold Change	padj	log2Fold Change	padj	log2Fold Change	padj	log2Fold Change	padj
107491333	ABC transporter A family member 2	ABCA2									0.753	0.013
107491332	ABC transporter A family member 7, transcript variant × 1	ABCA7									0.784	0.006
107479052	ABC transporter B family member 2-like, transcript variant X5	ABCB2							− 1.713	0.034
107467550	ABC transporter B family member 11	ABCB11					2.600	0.000	2.761	0.000	2.126	0.000
107495097	ABC transporter B family member 11-like	ABCB11			1.352	0.009			−1.652	0.008	−2.400	0.000
107471179	ABC transporter B family member 19	ABCB19	1.270	0.013	1.005	0.010			−2.171	0.000	−1.889	0.000
107476483	ABC transporter B family member 19	ABCB19					2.380	0.000	3.120	0.000	1.561	0.020
107492327	ABC transporter B family member 21-like	ABCB21									2.000	0.030
107463694	ABC transporter C family member 3	ABCC3					1.313	0.000	1.045	0.004	1.339	0.000
107496250	ABC transporter C family member 3	ABCC3					3.254	0.000	3.073	0.000	2.248	0.000
107496270	ABC transporter C family member 3-like transcript variant ×2	ABCC3					−2.894	0.044
107475935	ABC transporter C family member 4	ABCC4							0.890	0.020
107464256	ABC transporter C family member 8, transcript variant ×2	ABCC8					1.918	0.000	1.132	0.010	1.548	0.000
107481980	putative ABC transporter C family member 15, transcript variant X2	ABCC15	2.018	0.000			2.888	0.000			2.391	0.000
107476479	ABC transporter F family member 1, transcript variant ×1	ABCF1					1.661	0.000			1.193	0.007
107470452	ABC transporter G family member 5-like	ABCG5					−1.958	0.000	−2.157	0.000	−1.762	0.000
107480222	ABC transporter G family member 5-like	ABCG5					−1.109	0.028	−1.497	0.002	−1.326	0.002
107467717	ABC transporter G family member 6-like	ABCG6					1.465	0.042	1.621	0.001	1.010	0.013
107466837	ABC transporter G family member 8-like	ABCG8					−1.145	0.041			− 1.331	0.001
107481537	ABC transporter G family member 11	ABCG11					1.012	0.028	1.305	0.001	1.107	0.002
107481662	ABC transporter G family member 11, transcript variant X2	ABCG11					4.356	0.000	3.055	0.000
107492554	ABC transporter G family member 15-like	ABCG15	5.706	0.032					−5.572	0.019
107467862	ABC transporter G family member 25	ABCG25					−1.042	0.018	−0.948	0.049
107469510	ABC transporter G family member 32	ABCG32									−1.273	0.020
107493900	ABC transporter G family member 39-like	ABCG39									−2.463	0.017
110273497	Cation/H⁺ antiporter 4-like	CAX4	4.519	0.001					−4.765	0.001
107479804	Cation/H⁺ antiporter 18-like, transcript variant X2	CAX18					1.903	0.000	2.838	0.000	2.334	0.000
107491686	Cation/H⁺ antiporter 20	CAX20					1.106	0.048	1.366	0.003
107474428	Copper transport protein ATX1								0.981	0.006
107477078	Copper transporter 1	COPT1	1.376	0.036			−1.926	0.002	−3.309	0.000
107484791	Copper transporter 2-like, transcript variant ×1	COPT2							−2.964	0.000
107484785	Copper transporter 6	COPT6							−3.354	0.026	−3.432	0.017
107484081	Fe²⁺ transport protein 1	IRT1	3.342	0.048			3.472	0.019
107491017	Fe²⁺ transport protein 1	IRT1					9.778	0.000	7.200	0.000	9.773	0.000
107494754	Fe²⁺ transport protein 1-like	IRT1	6.608	0.023			11.806	0.000	5.210	0.000	8.432	0.000
110279939	Fe²⁺ transport protein 1-like	IRT1			6.658	0.020
107486418	Metal tolerance protein 11, transcript variant x2	MTP11					0.890	0.046
107480469	Metal transporter Nramp3, transcript variant ×1	Nramp3					2.912	0.000	1.898	0.000	3.565	0.000
107460699	Metal transporter Nramp5	Nramp5	1.945	0.000	1.633	0.001	1.325	0.001
107460374	Metal-nicotianamine transporter	YSL3	−1.920	0.000					1.230	0.000	−0.648	0.042
107489952	Probable metal-nicotianamine transporter	YSL7									−0.901	0.012
107466086	Oligopeptide transporter 3	OPT3	1.857	0.000			4.594	0.000	2.725	0.000	4.720	0.000
107482451	Oligopeptide transporter 7, transcript variant x1	OPT7									−2.576	0.014
107471962	Probable copper-transporting ATPase	HMA5			1.311	0.000			2.409	0.000	1.311	0.000
107491634	Vacuolar iron transporter homolog 3	VIT3	−2.675	0.000			−6.523	0.001	−3.851	0.002	−6.562	0.001
107468698	Vacuolar iron transporter homolog 4	VIT4			2.925	0.032					−5.203	0.001
107481738	Vacuolar iron transporter homolog 4-like	VIT4					−1.108	0.005			−1.493	0.000
107481739	Vacuolar iron transporter homolog 4-like	VIT4	−4.145	0.000			−7.910	0.000			−8.370	0.000
107461527	Zinc transporter 1, transcript variant X1	ZIP1					−1.507	0.000			−1.671	0.000
107482454	Zinc transporter 5, transcript variant X2	ZIP5									−3.298	0.007
107494273	Zinc transporter 5-like	ZIP5					−6.223	0.021
107458282	Zinc transporter 6, chloroplastic	ZIP6					−0.933	0.036
107473088	Zinc transporter 6, chloroplastic	ZIP6					−1.994	0.000	−1.562	0.001	−1.418	0.006
107462023	Zinc transporter 11	ZIP11			0.925	0.009			0.831	0.034	−0.636	0.036

Data of DEGs showing a similar expression in pairwise comparisons were not shown in the table

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