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Table 4 DEPs affected by eCO2 in KEGG pathway analysis in Vitis vinifera L. cv. ‘Pinot Noir’ leaves

From: Elevated CO2 concentration promotes photosynthesis of grape (Vitis vinifera L. cv. ‘Pinot noir’) plantlet in vitro by regulating RbcS and Rca revealed by proteomic and transcriptomic profiles

UniProt ID

Accession

Description

Fold Change

P value

Cs/CK

C0/ CK

Cs/ CK

C0/ CK

Photosynthesis - antenna proteins

 A5ASW8

XP_002263201.1

chlorophyll a-b binding protein CP24 10A, chloroplastic [Vitis vinifera]

1.61

1.75

2.56E-07

3.51E-07

 A5BAI4

XP_003633024.1

Chlorophyll a-b binding protein, chloroplastic [Vitis vinifera]

0.94

1.39

0.0321

0.0001

 A5ASG6

XP_002271687.1

chlorophyll a-b binding protein 151, chloroplastic [Vitis vinifera]

1.46

0.94

9.56E-06

0.0177

 F6I5I9

XP_002273201.1

photosystem I chlorophyll a/b-binding protein 3–1, chloroplastic [Vitis vinifera]

1.50

1.50

5.03E-08

4.30E-08

 A5BW14

XP_002274150.2

chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera]

1.49

1.49

1.40E-07

1.07E-07

 F6HMH7

XP_002275075.1

chlorophyll a-b binding protein of LHCII type 1 [Vitis vinifera]

1.45

1.5

6.43E-08

3.28E-07

 F6H2E4

XP_002284493.1

chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera]

1.42

1.46

2.60E-06

5.47E-06

 A5C4U9

XP_002285646.1

chlorophyll a-b binding protein of LHCII type 1 [Vitis vinifera]

1.62

0.66

0.0006

0.0003

 A5BPB2

XP_002283566.1

chlorophyll a-b binding protein of LHCII type 1 [Vitis vinifera]

1.36

0.62

0.0014

0.0009

Photosynthesis

 F6H8B4

XP_002275624.1

oxygen-evolving enhancer protein 3, chloroplastic [Vitis vinifera]

1.76

1.91

2.68E-08

2.24E-08

 E0CQV6

XP_002285904.1

Plastocyanin [Vitis vinifera]

0.59

1.88

6.97E-06

6.99E-08

 Q0ZJ25

YP_567071.1

photosystem II protein D2, chloroplastic [Vitis vinifera]

1.48

1.24

6.80E-09

1.27E-06

 Q0ZJ03

YP_567093.1

photosystem II protein V, chloroplastic [Vitis vinifera]

1.67

1.57

4.26E-07

7.82E-07

 F6HVW3

XP_002274963.1

ATP synthase delta chain, chloroplastic [Vitis vinifera]

1.30

1.42

5.11E-09

3.35E-09

 F6I0D9

XP_003631913.1

photosystem I reaction center subunit N, chloroplastic [Vitis vinifera]

1.37

1.42

4.83E-08

3.98E-09

Metabolic pathway

 D0VBC1

NP_001268000.1

3-deoxy-D-arabino-heptulosonate-7-phosphate synthase 03 [Vitis vinifera]

0.73

0.85

1.32E-05

0.0001

 A5ASW8

XP_002263201.1

Chlorophyll a-b binding protein, chloroplastic [Vitis vinifera]

1.61

1.71

2.56E-07

3.51E-07

 O22519

NP_001268064.1

chalcone synthase [Vitis vinifera]

1.16

0.66

0.0027

3.91E-05

 A5BAI4

XP_003633024.1

Chlorophyll a-b binding protein, chloroplastic [Vitis vinifera]

0.94

1.39

0.0321

0.0001

 D7TIY1

XP_002264311.2

Threonine dehydratase [Vitis vinifera]

0.67

0.79

4.02E-05

0.0004

 F6HTH9

XP_002267374.1

bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Vitis vinifera]

0.68

0.87

4.02E-06

0.0002

 F6H7K5

XP_002267414.1

thiamine thiazole synthase 2, chloroplastic [Vitis vinifera]

0.69

0.81

8.41E-08

8.09E-07

 A5B8T3

XP_002268097.1

fructokinase-2-like [Vitis vinifera]

0.62

0.85

8.58E-07

1.59E-05

 D7U461

XP_002279832.1

probable mannitol dehydrogenase [Vitis vinifera]

0.78

0.90

0.0095

0.1358

 D7TUX2

XP_002270188.1

bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic [Vitis vinifera]

0.55

0.65

2.21E-08

3.95E-07

 D7UBU8

XP_002270736.1

cytochrome P450 77A2 [Vitis vinifera]

0.61

0.80

2.45E-05

0.0004

 D7T9N2

XP_002276048.1

UDP-N-acetylglucosamine diphosphorylase 1 [Vitis vinifera]

0.94

0.90

0.0238

0.0012

 A5ASG6

XP_002271687.1

chlorophyll a-b binding protein 151, chloroplastic-like [Vitis vinifera]

1.46

0.94

9.56E-06

0.0177

 F6HIF0

NP_001267871.1

aconitase 2, mitochondria [Vitis vinifera]

1.00

1.07

0.6560

0.0089

 A5BW14

XP_002274150.2

chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera]

1.49

1.49

1.40E-07

1.07E-07

 F6HMH7

XP_002275075.1

chlorophyll a-b binding protein of LHCII type 1 [Vitis vinifera]

1.45

1.5

6.43E-08

3.28E-07

 F6I639

XP_002275348.1

probable glycerol-3-phosphate acyltransferase 8 [Vitis vinifera]

0.70

0.91

3.15E-06

0.0025

 F6H8B4

XP_002275624.1

oxygen-evolving enhancer protein 3, chloroplastic [Vitis vinifera]

1.76

1.91

2.68E-08

2.24E-08

 F6HA36

XP_002275678.1

L-ascorbate oxidase [Vitis vinifera]

0.64

1.17

0.0015

0.0344

 F6HG44

XP_002270414.1

glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic [Vitis vinifera]

1.11

0.99

0.0112

0.7452

 F6HDH8

XP_002276777.1

beta-amylase 1, chloroplastic [Vitis vinifera]

0.46

0.95

3.73E-05

0.0009

 A5C718

XP_002276967.1

ribulose bisphosphate carboxylase small chain, chloroplastic [Vitis vinifera]

1.40

1.31

8.83E-09

5.77E-08

 F6HKX6

XP_002277825.3

acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic [Vitis vinifera]

0.70

0.81

3.21E-07

5.36E-06

 F6HES4

XP_002278339.1

GDP-L-galactose phosphorylase 2 [Vitis vinifera]

0.65

0.70

4.62E-07

2.80E-07

 F6HDW1

XP_002279975.1

pyruvate kinase isozyme A, chloroplastic [Vitis vinifera]

0.66

0.81

2.26E-06

7.81E-05

 A5AGN5

XP_002280094.1

ketol-acid reductoisomerase, chloroplastic-like [Vitis vinifera]

0.68

0.87

3.24E-08

1.19E-06

 F6I397

XP_002280760.1

transketolase, chloroplastic [Vitis vinifera]

0.71

0.81

1.22E-06

9.10E-06

 F6H521

XP_002281731.1

peroxidase P7 [Vitis vinifera]

1.48

1.33

0.0002

0.0007

 F6H042

XP_002283364.1

geranylgeranyl pyrophosphate synthase, chloroplastic [Vitis vinifera]

0.66

0.92

0.0002

0.02701

 F6H2E4

XP_002284493.1

chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera]

1.42

1.46

2.59E-06

5.47E-06

 E0CSP0

XP_002284769.2

protochlorophyllide reductase, chloroplastic [Vitis vinifera]

0.70

0.86

0.0008

0.0084

 A5BZY3

XP_002285583.1

glutamyl-tRNA reductase 1, chloroplastic-like [Vitis vinifera]

0.62

0.81

2.28E-06

3.96E-05

 A5C4U9

XP_002285646.1

chlorophyll a-b binding protein of LHCII type 1 [Vitis vinifera]

1.62

0.66

0.0006

0.0003

 D7SYQ0

XP_010646454.1

acetolactate synthase small subunit 2, chloroplastic [Vitis vinifera]

0.69

0.78

4.67E-05

0.0003

 F6HA09

XP_010651495.1

serine--glyoxylate aminotransferase [Vitis vinifera]

1.47

1.28

6.07E-09

5.81E-08

 D7SVZ9

XP_010652823.1

inositol-3-phosphate synthase [Vitis vinifera]

1.42

1.26

5.87E-09

4.29E-08

 A5C6H7

XP_002271896.1

sucrose synthase 2 [Vitis vinifera]

1.01

0.99

0.8398

0.6544

 F6HWQ2

XP_010656841.1

aspartokinase 1, chloroplastic [Vitis vinifera]

0.86

0.86

0.0002

0.0002

 E0CUM8

XP_010662621.1

plastidial pyruvate kinase 2 [Vitis vinifera]

0.68

0.80

2.87E-05

0.0002

 A5CAL1

XP_003632860.1

hydroxyphenylpyruvate reductase [Vitis vinifera]

0.99

0.87

0.4973

5.87E-06

 D7UCD0

XP_019081328.1

bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial [Vitis vinifera]

1.45

1.23

1.46E-08

4.39E-06

 Q0ZJ25

YP_567071.1

photosystem II protein D2 [Vitis vinifera]

1.48

1.24

6.80E-09

1.27E-06

 Q0ZJ03

YP_567093.1

photosystem II protein V,chloroplast [Vitis vinifera]

1.67

1.57

4.26E-07

7.82E-07

 D7T2U5

XP_002270422.2

beta-glucosidase 13 [Vitis vinifera]

0.87

0.65

0.0060

0.0001

 F6HVW3

XP_002274963.1

ATP synthase delta chain, chloroplastic [Vitis vinifera]

1.30

1.42

5.11E-09

3.35E-09

 A5BPT8

XP_002285277.1

phenylalanine ammonia-lyase-like [Vitis vinifera]

0.93

0.71

0.0104

0.0002

 F6I0D9

XP_003631913.1

photosystem I reaction center subunit N, chloroplastic [Vitis vinifera]

1.37

1.42

4.83E-08

3.98E-09

 F6H0Z0

XP_003634480.1

cationic peroxidase 1 [Vitis vinifera]

1.11

1.51

0.0001

6.57E-06