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Table 4 DEPs affected by eCO2 in KEGG pathway analysis in Vitis vinifera L. cv. ‘Pinot Noir’ leaves

From: Elevated CO2 concentration promotes photosynthesis of grape (Vitis vinifera L. cv. ‘Pinot noir’) plantlet in vitro by regulating RbcS and Rca revealed by proteomic and transcriptomic profiles

UniProt ID Accession Description Fold Change P value
Cs/CK C0/ CK Cs/ CK C0/ CK
Photosynthesis - antenna proteins
 A5ASW8 XP_002263201.1 chlorophyll a-b binding protein CP24 10A, chloroplastic [Vitis vinifera] 1.61 1.75 2.56E-07 3.51E-07
 A5BAI4 XP_003633024.1 Chlorophyll a-b binding protein, chloroplastic [Vitis vinifera] 0.94 1.39 0.0321 0.0001
 A5ASG6 XP_002271687.1 chlorophyll a-b binding protein 151, chloroplastic [Vitis vinifera] 1.46 0.94 9.56E-06 0.0177
 F6I5I9 XP_002273201.1 photosystem I chlorophyll a/b-binding protein 3–1, chloroplastic [Vitis vinifera] 1.50 1.50 5.03E-08 4.30E-08
 A5BW14 XP_002274150.2 chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera] 1.49 1.49 1.40E-07 1.07E-07
 F6HMH7 XP_002275075.1 chlorophyll a-b binding protein of LHCII type 1 [Vitis vinifera] 1.45 1.5 6.43E-08 3.28E-07
 F6H2E4 XP_002284493.1 chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera] 1.42 1.46 2.60E-06 5.47E-06
 A5C4U9 XP_002285646.1 chlorophyll a-b binding protein of LHCII type 1 [Vitis vinifera] 1.62 0.66 0.0006 0.0003
 A5BPB2 XP_002283566.1 chlorophyll a-b binding protein of LHCII type 1 [Vitis vinifera] 1.36 0.62 0.0014 0.0009
Photosynthesis
 F6H8B4 XP_002275624.1 oxygen-evolving enhancer protein 3, chloroplastic [Vitis vinifera] 1.76 1.91 2.68E-08 2.24E-08
 E0CQV6 XP_002285904.1 Plastocyanin [Vitis vinifera] 0.59 1.88 6.97E-06 6.99E-08
 Q0ZJ25 YP_567071.1 photosystem II protein D2, chloroplastic [Vitis vinifera] 1.48 1.24 6.80E-09 1.27E-06
 Q0ZJ03 YP_567093.1 photosystem II protein V, chloroplastic [Vitis vinifera] 1.67 1.57 4.26E-07 7.82E-07
 F6HVW3 XP_002274963.1 ATP synthase delta chain, chloroplastic [Vitis vinifera] 1.30 1.42 5.11E-09 3.35E-09
 F6I0D9 XP_003631913.1 photosystem I reaction center subunit N, chloroplastic [Vitis vinifera] 1.37 1.42 4.83E-08 3.98E-09
Metabolic pathway
 D0VBC1 NP_001268000.1 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase 03 [Vitis vinifera] 0.73 0.85 1.32E-05 0.0001
 A5ASW8 XP_002263201.1 Chlorophyll a-b binding protein, chloroplastic [Vitis vinifera] 1.61 1.71 2.56E-07 3.51E-07
 O22519 NP_001268064.1 chalcone synthase [Vitis vinifera] 1.16 0.66 0.0027 3.91E-05
 A5BAI4 XP_003633024.1 Chlorophyll a-b binding protein, chloroplastic [Vitis vinifera] 0.94 1.39 0.0321 0.0001
 D7TIY1 XP_002264311.2 Threonine dehydratase [Vitis vinifera] 0.67 0.79 4.02E-05 0.0004
 F6HTH9 XP_002267374.1 bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Vitis vinifera] 0.68 0.87 4.02E-06 0.0002
 F6H7K5 XP_002267414.1 thiamine thiazole synthase 2, chloroplastic [Vitis vinifera] 0.69 0.81 8.41E-08 8.09E-07
 A5B8T3 XP_002268097.1 fructokinase-2-like [Vitis vinifera] 0.62 0.85 8.58E-07 1.59E-05
 D7U461 XP_002279832.1 probable mannitol dehydrogenase [Vitis vinifera] 0.78 0.90 0.0095 0.1358
 D7TUX2 XP_002270188.1 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic [Vitis vinifera] 0.55 0.65 2.21E-08 3.95E-07
 D7UBU8 XP_002270736.1 cytochrome P450 77A2 [Vitis vinifera] 0.61 0.80 2.45E-05 0.0004
 D7T9N2 XP_002276048.1 UDP-N-acetylglucosamine diphosphorylase 1 [Vitis vinifera] 0.94 0.90 0.0238 0.0012
 A5ASG6 XP_002271687.1 chlorophyll a-b binding protein 151, chloroplastic-like [Vitis vinifera] 1.46 0.94 9.56E-06 0.0177
 F6HIF0 NP_001267871.1 aconitase 2, mitochondria [Vitis vinifera] 1.00 1.07 0.6560 0.0089
 A5BW14 XP_002274150.2 chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera] 1.49 1.49 1.40E-07 1.07E-07
 F6HMH7 XP_002275075.1 chlorophyll a-b binding protein of LHCII type 1 [Vitis vinifera] 1.45 1.5 6.43E-08 3.28E-07
 F6I639 XP_002275348.1 probable glycerol-3-phosphate acyltransferase 8 [Vitis vinifera] 0.70 0.91 3.15E-06 0.0025
 F6H8B4 XP_002275624.1 oxygen-evolving enhancer protein 3, chloroplastic [Vitis vinifera] 1.76 1.91 2.68E-08 2.24E-08
 F6HA36 XP_002275678.1 L-ascorbate oxidase [Vitis vinifera] 0.64 1.17 0.0015 0.0344
 F6HG44 XP_002270414.1 glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic [Vitis vinifera] 1.11 0.99 0.0112 0.7452
 F6HDH8 XP_002276777.1 beta-amylase 1, chloroplastic [Vitis vinifera] 0.46 0.95 3.73E-05 0.0009
 A5C718 XP_002276967.1 ribulose bisphosphate carboxylase small chain, chloroplastic [Vitis vinifera] 1.40 1.31 8.83E-09 5.77E-08
 F6HKX6 XP_002277825.3 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic [Vitis vinifera] 0.70 0.81 3.21E-07 5.36E-06
 F6HES4 XP_002278339.1 GDP-L-galactose phosphorylase 2 [Vitis vinifera] 0.65 0.70 4.62E-07 2.80E-07
 F6HDW1 XP_002279975.1 pyruvate kinase isozyme A, chloroplastic [Vitis vinifera] 0.66 0.81 2.26E-06 7.81E-05
 A5AGN5 XP_002280094.1 ketol-acid reductoisomerase, chloroplastic-like [Vitis vinifera] 0.68 0.87 3.24E-08 1.19E-06
 F6I397 XP_002280760.1 transketolase, chloroplastic [Vitis vinifera] 0.71 0.81 1.22E-06 9.10E-06
 F6H521 XP_002281731.1 peroxidase P7 [Vitis vinifera] 1.48 1.33 0.0002 0.0007
 F6H042 XP_002283364.1 geranylgeranyl pyrophosphate synthase, chloroplastic [Vitis vinifera] 0.66 0.92 0.0002 0.02701
 F6H2E4 XP_002284493.1 chlorophyll a-b binding protein 13, chloroplastic [Vitis vinifera] 1.42 1.46 2.59E-06 5.47E-06
 E0CSP0 XP_002284769.2 protochlorophyllide reductase, chloroplastic [Vitis vinifera] 0.70 0.86 0.0008 0.0084
 A5BZY3 XP_002285583.1 glutamyl-tRNA reductase 1, chloroplastic-like [Vitis vinifera] 0.62 0.81 2.28E-06 3.96E-05
 A5C4U9 XP_002285646.1 chlorophyll a-b binding protein of LHCII type 1 [Vitis vinifera] 1.62 0.66 0.0006 0.0003
 D7SYQ0 XP_010646454.1 acetolactate synthase small subunit 2, chloroplastic [Vitis vinifera] 0.69 0.78 4.67E-05 0.0003
 F6HA09 XP_010651495.1 serine--glyoxylate aminotransferase [Vitis vinifera] 1.47 1.28 6.07E-09 5.81E-08
 D7SVZ9 XP_010652823.1 inositol-3-phosphate synthase [Vitis vinifera] 1.42 1.26 5.87E-09 4.29E-08
 A5C6H7 XP_002271896.1 sucrose synthase 2 [Vitis vinifera] 1.01 0.99 0.8398 0.6544
 F6HWQ2 XP_010656841.1 aspartokinase 1, chloroplastic [Vitis vinifera] 0.86 0.86 0.0002 0.0002
 E0CUM8 XP_010662621.1 plastidial pyruvate kinase 2 [Vitis vinifera] 0.68 0.80 2.87E-05 0.0002
 A5CAL1 XP_003632860.1 hydroxyphenylpyruvate reductase [Vitis vinifera] 0.99 0.87 0.4973 5.87E-06
 D7UCD0 XP_019081328.1 bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial [Vitis vinifera] 1.45 1.23 1.46E-08 4.39E-06
 Q0ZJ25 YP_567071.1 photosystem II protein D2 [Vitis vinifera] 1.48 1.24 6.80E-09 1.27E-06
 Q0ZJ03 YP_567093.1 photosystem II protein V,chloroplast [Vitis vinifera] 1.67 1.57 4.26E-07 7.82E-07
 D7T2U5 XP_002270422.2 beta-glucosidase 13 [Vitis vinifera] 0.87 0.65 0.0060 0.0001
 F6HVW3 XP_002274963.1 ATP synthase delta chain, chloroplastic [Vitis vinifera] 1.30 1.42 5.11E-09 3.35E-09
 A5BPT8 XP_002285277.1 phenylalanine ammonia-lyase-like [Vitis vinifera] 0.93 0.71 0.0104 0.0002
 F6I0D9 XP_003631913.1 photosystem I reaction center subunit N, chloroplastic [Vitis vinifera] 1.37 1.42 4.83E-08 3.98E-09
 F6H0Z0 XP_003634480.1 cationic peroxidase 1 [Vitis vinifera] 1.11 1.51 0.0001 6.57E-06