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Table 2 Functional annotation statistics

From: First RNA-seq approach to study fruit set and parthenocarpy in zucchini (Cucurbita pepo L.)

  PF MU16 vs UF MU16 PF MU16 vs UF MU16 PF MU16 vs UF MU16 PF MU16 vs UF MU16 PF MU16 vs UF MU16
Database
C. pepo trancriptome v3 3539 54.62% 1249 57.14% 6231
59.36%
3354
58.66%
3261
53.28%
A. thaliana genome 2177 33.60% 734
33.58%
3951
37.64%
1988
34.77%
1826
29.84%
A. thaliana péptides 2875
44.37%
995
45.52%
5122
48.79%
2701
47.24%
2564
41.90%
 NCBI Nucleotide collection nr 3581
55.27%
1255 57.41% 6276
59.79%
3748
65.55%
3194
52.19%
 Swiss prot 2398
37.01%
850
38.88%
4226
40.26%
2238
39.14%
2142
35.00%
Cucurbita pepo ssp.ovifera 3489
53.85%
1273
58.23%
5878
56.00
3247
56.79%
3331
54.43%
 IntrePro 2659
41.04%
1367
62.53%
6805
64.83%
3671
64.20%
3793
61.98%
 Gene Ontology GO term 1650
25.47%
623
28.50%
3089
29.43%
1632
28.54%
1598
26.11%
 KEGG Pathway 275
4.24%
114
5.22%
564
5.37%
312
5.46%
286
4.67%
  1. Number and percentage of DEGs annotated in each database