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Table 1 Statistics of the mapping of RNA-seq libraries. MU16 and WHT correspond to the genotipes MUCU-16 (Non parthenocarpic) and Whitaker (parthenocarpic) respectively. UF, PF and AF correspond to the fruit treatments and control Unpollinated Fruit, Pollinated Fruit and Auxin Treated Fruit respectively

From: First RNA-seq approach to study fruit set and parthenocarpy in zucchini (Cucurbita pepo L.)

C. pepo transcriptome v3

UF MU16

PF MU16

AF MU16

UF WHT

PF WHT

AF WHT

Raw Reads

80,057,152

84,843,056

42,494,528

66,404,290

64,111,386

65,846,378

Total clean reads

78,004,856

100.00%

81,811,068

100.00%

41,482,294

100.00%

64,924,704

100.00%

62,637,308

100.00%

64,790,236

100.00%

Total mapped reads

68,718,640

88.10%

71,723,387

87.67%

36,470,891

87.92%

56,826,277

87.53%

54,627,828

87.21%

56,479,396

87.17%

Unique mapped reads

40,386,479

51.77%

42,489,891

51.94%

21,235,135

51.19%

32,592,183

50.20%

32,370,915

51.68%

32,814,187

50.65%

Multiple mapped reads

28,332,161

36.32%

29,333,496

35.73%

15,235,756

36.73%

24,234,094

37.33%

22,256,913

35.53%

23,665,209

36.53%

Unmapped reads

9,286,216

11.90%

10,087,681

12.33%

5,011,403

12.08%

8,098,427

12.47%

8,009,480

12.79%

8,310,840

12.83%

New C. pepo transcriptome

UF MU16

PF MU16

AF MU16

UF WHT

PF WHT

AF WHT

Raw Reads

80,057,152

84,843,056

42,494,528

66,404,290

64,111,386

65,846,378

Total clean reads

78,004,856

100.00%

81,811,068

100.00%

41,482,294

100.00%

64,924,704

100.00%

62,637,308

100.00%

64,790,236

100.00%

Total mapped reads

71,334,429

91.92%

74,876,005

92.12%

37,945,731

91.92%

58,994,451

91.31%

57,271,131

91.95%

59,000,017

91.45%

Unique mapped reads

64,606,549

83.25%

67,204,342

82.68%

34,318,723

83.13%

53,882,331

83.31%

51,536,930

81.74%

53,573,732

83.04%

Multiple mapped reads

6,727,880

8.67%

7,671,663

9.44%

3,627,008

8.79%

5,172,120

8.01%

5,734,201

9.21%

5,426,285

8.41%

Unmapped reads

6,270,823

8.08%

6,404,401

7.88%

3,336,953

8.08%

5,613,463

8.69%

5,015,741

8.05%

5,517,123

8.55%

  1. Data is represented by numbers of reads and percentage represented