From: First RNA-seq approach to study fruit set and parthenocarpy in zucchini (Cucurbita pepo L.)
C. pepo transcriptome v3 | UF MU16 | PF MU16 | AF MU16 | UF WHT | PF WHT | AF WHT |
---|---|---|---|---|---|---|
Raw Reads | 80,057,152 | 84,843,056 | 42,494,528 | 66,404,290 | 64,111,386 | 65,846,378 |
Total clean reads | 78,004,856 100.00% | 81,811,068 100.00% | 41,482,294 100.00% | 64,924,704 100.00% | 62,637,308 100.00% | 64,790,236 100.00% |
Total mapped reads | 68,718,640 88.10% | 71,723,387 87.67% | 36,470,891 87.92% | 56,826,277 87.53% | 54,627,828 87.21% | 56,479,396 87.17% |
Unique mapped reads | 40,386,479 51.77% | 42,489,891 51.94% | 21,235,135 51.19% | 32,592,183 50.20% | 32,370,915 51.68% | 32,814,187 50.65% |
Multiple mapped reads | 28,332,161 36.32% | 29,333,496 35.73% | 15,235,756 36.73% | 24,234,094 37.33% | 22,256,913 35.53% | 23,665,209 36.53% |
Unmapped reads | 9,286,216 11.90% | 10,087,681 12.33% | 5,011,403 12.08% | 8,098,427 12.47% | 8,009,480 12.79% | 8,310,840 12.83% |
New C. pepo transcriptome | UF MU16 | PF MU16 | AF MU16 | UF WHT | PF WHT | AF WHT |
Raw Reads | 80,057,152 | 84,843,056 | 42,494,528 | 66,404,290 | 64,111,386 | 65,846,378 |
Total clean reads | 78,004,856 100.00% | 81,811,068 100.00% | 41,482,294 100.00% | 64,924,704 100.00% | 62,637,308 100.00% | 64,790,236 100.00% |
Total mapped reads | 71,334,429 91.92% | 74,876,005 92.12% | 37,945,731 91.92% | 58,994,451 91.31% | 57,271,131 91.95% | 59,000,017 91.45% |
Unique mapped reads | 64,606,549 83.25% | 67,204,342 82.68% | 34,318,723 83.13% | 53,882,331 83.31% | 51,536,930 81.74% | 53,573,732 83.04% |
Multiple mapped reads | 6,727,880 8.67% | 7,671,663 9.44% | 3,627,008 8.79% | 5,172,120 8.01% | 5,734,201 9.21% | 5,426,285 8.41% |
Unmapped reads | 6,270,823 8.08% | 6,404,401 7.88% | 3,336,953 8.08% | 5,613,463 8.69% | 5,015,741 8.05% | 5,517,123 8.55% |