Skip to main content

Table 1 Statistics of the mapping of RNA-seq libraries. MU16 and WHT correspond to the genotipes MUCU-16 (Non parthenocarpic) and Whitaker (parthenocarpic) respectively. UF, PF and AF correspond to the fruit treatments and control Unpollinated Fruit, Pollinated Fruit and Auxin Treated Fruit respectively

From: First RNA-seq approach to study fruit set and parthenocarpy in zucchini (Cucurbita pepo L.)

C. pepo transcriptome v3 UF MU16 PF MU16 AF MU16 UF WHT PF WHT AF WHT
Raw Reads 80,057,152 84,843,056 42,494,528 66,404,290 64,111,386 65,846,378
Total clean reads 78,004,856
100.00%
81,811,068
100.00%
41,482,294
100.00%
64,924,704
100.00%
62,637,308
100.00%
64,790,236
100.00%
Total mapped reads 68,718,640
88.10%
71,723,387
87.67%
36,470,891
87.92%
56,826,277
87.53%
54,627,828
87.21%
56,479,396
87.17%
Unique mapped reads 40,386,479
51.77%
42,489,891
51.94%
21,235,135
51.19%
32,592,183
50.20%
32,370,915
51.68%
32,814,187
50.65%
Multiple mapped reads 28,332,161
36.32%
29,333,496
35.73%
15,235,756
36.73%
24,234,094
37.33%
22,256,913
35.53%
23,665,209
36.53%
Unmapped reads 9,286,216
11.90%
10,087,681
12.33%
5,011,403
12.08%
8,098,427
12.47%
8,009,480
12.79%
8,310,840
12.83%
New C. pepo transcriptome UF MU16 PF MU16 AF MU16 UF WHT PF WHT AF WHT
Raw Reads 80,057,152 84,843,056 42,494,528 66,404,290 64,111,386 65,846,378
Total clean reads 78,004,856
100.00%
81,811,068
100.00%
41,482,294
100.00%
64,924,704
100.00%
62,637,308
100.00%
64,790,236
100.00%
Total mapped reads 71,334,429
91.92%
74,876,005
92.12%
37,945,731
91.92%
58,994,451
91.31%
57,271,131
91.95%
59,000,017
91.45%
Unique mapped reads 64,606,549
83.25%
67,204,342
82.68%
34,318,723
83.13%
53,882,331
83.31%
51,536,930
81.74%
53,573,732
83.04%
Multiple mapped reads 6,727,880
8.67%
7,671,663
9.44%
3,627,008
8.79%
5,172,120
8.01%
5,734,201
9.21%
5,426,285
8.41%
Unmapped reads 6,270,823
8.08%
6,404,401
7.88%
3,336,953
8.08%
5,613,463
8.69%
5,015,741
8.05%
5,517,123
8.55%
  1. Data is represented by numbers of reads and percentage represented