SNP IDa | Maj/Min Alleleb | Chrc | MAFd | Phenotype | GWAS model | P-vale | P-valregf | P-val FDRg | αh | PVEi | SNP location | Gene ID P. persica v1.0 (v2.1) | TAIR10 BLASTp homologyj | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Description | E-value | |||||||||||||
LG6_15273858 | A/G | 6 | 0.43 | lgc G | multi-locus | 1.22E-07 | 1.22E-07 | – | 0.20 | 41 | Intron | ppa018341m.g | AT5G41980 Unknown Protein CONTAINS Harbinger transposase-derived nuclease domain | 7E-51 |
GEMMA | 2.88E-07 | – | 2.21E-03 | 0.21 | – | |||||||||
bs G | 0.28 | – | ||||||||||||
0.42 | lgc (G × Y)2013 | multi-locus | 3.85E-07 | 3.85E-07 | – | 0.14 | 40 | |||||||
0.43 | lgc (G × Y)2015 | multi-locus | 1.04E-06 | 1.04E-06 | 0.26 | 46 | ||||||||
LG5_5394803 | G/A | 5 | 0.19 | lgc G | GEMMA | 9.46E-06 | – | 4.88E-02 | −0.15 | – | Intron | ppa000004m.g (Prupe.5G050700) | AT4G17140 Predicted: Pleckstrin (PH) domain containing protein | 0.0 |
bs G | −0.38 | |||||||||||||
multi-locus | 8.10E-06 | 1.05E-08 | – | −0.32 | 26 | |||||||||
LG3_10897844 | T/A | 3 | 0.32 | bs G | multi-locus | 4.60E-03 | 2.73E-06 | – | −0.31 | 19 | CDS* | ppa017602m.g (Prupe.3G152500) | AT5G17460 Glutamyl-tRNA (Gln) amidotransferase subunit C | 2E-66 |
LG2_22535054 | T/C | 2 | 0.30 | multi-locus | 8.08E-05 | 2.27E-06 | −0.29 | 17 | Intron | ppa023961m.g (Prupe.2G242100) | AT3G46850 Subtilisin-like protease SBT4.6 | 0.0 | ||
LG3_4322444 | G/A | 3 | 0.39 | bs (G × Y)2015 | multi-locus | 7.22E-06 | 6.98E-06 | 0.46 | 43 | CDS* | ppa008956m.g (Prupe.3G072200) | AT1G52360 Coatomer subunit beta’-2 | 6.8e-117 | |
LG5_4842835 | T/A | 5 | 0.19 | multi-locus | 7.00E-05 | 1.68E-05 | −0.25 | 20 | Intron | ppa020388m.g (Prupe.5G044100) | AT4G18010 Type I inositol polyphosphate 5-phosphatase 2, IP5P2 | 0.0 | ||
LG7_18047191 | C/T | 7 | 0.45 | lgc G | GEMMA | 4.47E-07 | – | 2.72E-03 | −0.05 | 3 | Intron | ppa001722m.g (Prupe.7G179600) | AT5G66030 GRIP Protein | 0.0 |
bs G | 0.19 | 12 |