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Fig. 2 | BMC Plant Biology

Fig. 2

From: Genome-wide association multi-locus and multi-variate linear mixed models reveal two linked loci with major effects on partial resistance of apricot to bacterial canker

Fig. 2

Manhattan plots of the –log10(p-values) over physical positions in windows surrounding LG6_15273858 and LG5_5394803 associations. Genomic windows are approximately 201.82 kb (chromosome 5) and 307.44 kb (chromosome 6). Significance level was determined with eBIC criterion. As an indication, Bonferroni threshold = −log10(p-valuethr) = 6.10. Detected SNP are shown with red stars and overlapping candidate genes indicated with arrows. Heatmaps of pairwise LD estimates (\( {r}_{vs}^2\Big) \) were drawn both within the genomic window around each candidate and between the two genomic frames (inter-chromosome scale). Different colors and scales are used to represent the pairwise LD estimates between inter or intra SNP pairs. Only inter-chromosomal pairwise LD \( {r}_{vs}^2 \)over the 99th percentile of the \( {r}_{vs}^2 \) distribution are displayed

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