Skip to main content

Table 1 DNA primers sequences for polymorphic markers designed for fine mapping of qRDWN6XB on chromosome 6

From: RDWN6XB, a major quantitative trait locus positively enhances root system architecture under nitrogen deficiency in rice

Marker

Marker type

Forward primer sequence

Reverse primer sequence

Purpose

Size

RM5963

SSR

TCAAGTTACGGGAAATGTGTGG

CTGCCTAGCTTCCGTTTCTCC

Primary mapping

139

InD90

InDel

CCTCATCCAGGGGTCATGTA

CGGTCAAGTGTCATCCAGGT

Primary mapping

19

RM20069

SSR

GCGAGCGAGAGGAGAGATAGACG

CGAATTCGGCACGAGTAATAGGG

Primary mapping

157

ND-3

InDel

AGACGGTGATATCGGTGAGT

GGAGTTTAGTGGCTGCATCA

Fine mapping

258

ND-4

InDel

AAAACACCAAAGAATCCGGC

AGGATAGGAAAACCGTGCAA

Fine mapping

282

ND-5

InDel

GCTTTAGCTACGGTTTCCGA

TTTGACTCGTCCCAATAGGC

Fine mapping

225

ND-11

InDel

CCGAGTAGCGAAGCTCAAAT

CTAGCATGGACGAACGGATG

Fine mapping

103

ND-13

InDel

ATTCAGCGTTCCTTAACCCG

GACAGAGTCGAGAAACCGTG

Fine mapping

116

ND-15

InDel

AGATCTCACATGATTATATTCCGA

TCTGCAACAAAGTGAAATCCT

Fine mapping

117

  1. SSR Simple Sequence Repeat, InDel Insertion/deletion