Transcriptomic and biochemical analysis of upland cotton (Gossypium hirsutum) and a chromosome segment substitution line from G. hirsutum × G. barbadense in response to Verticillium dahliae infection

Table 2 Throughput and quality of RNA-seq of the 18 libraries

Libraries	Raw reads	Clean reads	Clean bases	Q30 (%)	GC (%)	Total match(%)	Multiple match(%)	Unique match(%)
CCRI36–0I	56,789,392	55,874,790	8.38G	92.32	43.65	90.26	7.16	83.1
CCRI36–0II	54,872,602	54,020,096	8.1G	92.38	43.63	89.86	7.08	82.78
CCRI36–0III	54,595,684	53,962,178	8.09G	92.66	43.8	91.23	7	84.23
CCRI26-1I	52,215,302	51,603,780	7.74G	92.55	43.8	91.65	7.36	84.29
CCRI36–1II	49,878,906	49,240,112	7.39G	92.31	43.84	90.75	7.61	83.15
CCRI36–1III	60,433,302	58,873,730	8.83G	90.45	43.61	87.52	8.39	79.13
CCRI36–2I	55,215,736	54,486,388	8.17G	92.35	43.5	91.02	7.44	83.59
CCRI36–2II	53,009,636	52,206,706	7.83G	91.73	43.99	89.17	6.86	82.3
CCRI36–2III	43,962,200	43,194,444	6.48G	93.13	43.6	87.69	6.63	81.06
MBI8255–0I	46,707,676	45,868,652	6.88G	92.4	43.57	90.9	7.11	83.79
MBI8255–0II	51,016,406	50,290,518	7.54G	92.31	43.68	90.35	7.25	83.1
MBI8255–0III	48,958,146	48,291,880	7.24G	92.27	43.87	90.48	7.16	83.32
MBI8255–1I	47,850,214	47,192,996	7.08G	92.58	43.44	90.71	7.31	83.4
MBI8255–1II	51,331,338	50,606,826	7.59G	92.79	43.64	91.23	8.05	83.19
MBI8255–1III	53,415,870	52,706,364	7.91G	92.84	43.76	90.53	7.17	83.36
MBI8255–2I	47,814,682	46,903,434	7.04G	91.38	43.48	89.53	7.1	82.44
MBI8255–2II	42,917,798	42,231,086	6.33G	91.92	43.61	90.29	7.1	83.19
MBI8255–2III	51,881,984	50,993,450	7.65G	91.74	43.72	89.2	7.15	82.05
Average	51,270,382	50,474,857	7.57G	92.23	43.68	90.13	7.27	82.86

ISSN: 1471-2229