Table 1 Examples of differentially expressed genes under Zn deficiency
From: The transcriptome of zinc deficient maize roots and its relationship to DNA methylation loss
Gene ID | Annotation | FPKM Control | FPKM -Zn | Log2 FC |
|---|---|---|---|---|
GRMZM2G111300 | ZIP-type metal cation transporter ZmZIP4 | 68.3 | 255.7 | 1.90 |
GRMZM2G045849 | ZIP-type metal cation transporter ZmZIP3 | 52.9 | 106.0 | 1.02 |
GRMZM2G064382 | ZIP-type metal cation transporter ZmZIP5 | 8.3 | 154.6 | 4.21 |
GRMZM2G015955 | ZIP-type metal cation transporter ZmZIP7 | 114.9 | 195.9 | 0.77 |
GRMZM2G047762 | ZIP-type metal cation transporter ZmZIP1-related | 26.2 | 134.9 | 2.37 |
GRMZM2G093276 | ZIP-type metal cation transporter ZmZIP8 | 20.6 | 119.6 | 2.54 |
GRMZM2G106928 | Superoxide dismutase | 58.0 | 25.6 | −1.18 |
GRMZM2G175728 | Superoxide dismutase | 11.7 | 3.2 | −1.89 |
GRMZM2G410175 | Peroxidase | 66.6 | 0.9 | −6.3 |
GRMZM2G048474 | Peroxidase | 76.1 | 3.5 | −4.4 |
GRMZM2G478568 | Nicotianamine synthase ZmNAS3 | 19.2 | 45.1 | 1.23 |
GRMZM2G050108 | Nicotianamine synthase ZmNAS5 | 35.5 | 186.7 | 2.40 |
GRMZM2G312481 | Nicotianamine synthase ZmNAS8 | 0.4 | 2.2 | 2.64 |
GRMZM2G385200 | Nicotianamine synthase ZmNAS1 | 1.5 | 8.5 | 2.49 |
GRMZM2G034956 | Nicotianamine synthase ZmNAS10 | 5.0 | 0.4 | −3.60 |
GRMZM2G348512 | Carbonic Anhydrase 2 | 230.8 | 125.3 | −0.88 |
GRMZM2G046924 | Carbonic Anhydrase 1 | 89.2 | 54.1 | −0.72 |
GRMZM2G073860 | Purple acid phosphatase 10 | 7.8 | 17.9 | 1.19 |
GRMZM2G134054 | Purple acid phosphatase 15 | 3.90 | 10.9 | 1.48 |
GRMZM2G133322 | sugar efflux transporter ZmSWEET12a | 1.2 | 78.3 | 6.07 |
GRMZM2G060974 | sugar efflux transporter ZmSWEET3b | 17.5 | 0.3 | −5.77 |
GRMZM2G173669 | sugar efflux transporter ZmSWEET13a | 75.2 | 1229.6 | 4.03 |
GRMZM2G179349 | sugar efflux transporter ZmSWEET13c | 7 | 79.2 | 3.51 |
GRMZM2G139834 | Nodulin MtN21 family protein | 29.1 | 2.6 | −3.51 |
GRMZM2G467893 | Nodulin family protein | 11.1 | 128.7 | 3.54 |
GRMZM2G001035 | vacuolar iron transport-like | 70.3 | 1.7 | −5.34 |
GRMZM2G173826 | Expansin-A12 precursor EXP11 | 15.4 | 1.7 | −3.16 |
GRMZM2G450546 | Expansin-A19 precursor EXP11 | 6.3 | 0.3 | −4.51 |
GRMZM2G021427 | Expansin-B3 precursor EXPB2 | 20.6 | 2.3 | −3.15 |
GRMZM2G327266 | Expansin-B11 precursor | 39.8 | 4 | −3.31 |
EXPB4 |