Table 1 Reads’ statistics before and after trimming
Sample name | Raw paired-end reads pairs | Both Surviving | Forward Only Surviving | Reverse Only Surviving | Dropped |
|---|---|---|---|---|---|
Infected | 30,669,583 | 27,345,451 (89.16%) | 2,814,040 (9.18%) | 354,038 (1.15%) | 156,054 (0.51%) |
Control | 36,967,121 | 32,541,568 (88.03%) | 3,787,558 (10.25%) | 439,064 (1.19%) | 198,931 (0.53) |