TY - JOUR AU - Horvath, A. A. PY - 1926 DA - 1926// TI - Changes in the blood composition of rabbits fed on raw soy beans JO - J Biol Chem VL - 68 ID - Horvath1926 ER - TY - JOUR AU - Masuda, T. AU - Goldsmith, P. D. PY - 2009 DA - 2009// TI - World soybean production: area harvested, yield, and long-term projections JO - International food and agribusiness management review VL - 12 ID - Masuda2009 ER - TY - JOUR AU - Friedman, M. AU - Brandon, D. L. PY - 2001 DA - 2001// TI - Nutritional and health benefits of soy proteins JO - J Agric Food Chem VL - 49 UR - https://doi.org/10.1021/jf0009246 DO - 10.1021/jf0009246 ID - Friedman2001 ER - TY - JOUR AU - Popp, J. AU - Harangi-Rákos, M. AU - Gabnai, Z. AU - Balogh, P. AU - Antal, G. AU - Bai, A. PY - 2016 DA - 2016// TI - Biofuels and their co-products as livestock feed: global economic and environmental implications JO - Molecules VL - 21 UR - https://doi.org/10.3390/molecules21030285 DO - 10.3390/molecules21030285 ID - Popp2016 ER - TY - STD TI - Miransari M, editor. Abiotic and biotic stresses in soybean production: soybean production. Academic press; 2015. ID - ref5 ER - TY - JOUR AU - Jadhav Pravin, V. AU - Mane, S. S. AU - Nandanwar, R. S. AU - Kale, P. B. AU - Dudhare, M. S. AU - Moharil, M. P. PY - 2013 DA - 2013// TI - Floral bud distortion in soybean and incidence in Central India JO - Egypt J Biol VL - 15 ID - Jadhav Pravin2013 ER - TY - JOUR AU - Subekti, N. A. PY - 2008 DA - 2008// TI - The effects of disease on plant reproduction as basis for breeding for disease resistance JO - In Proceedings of the scientific seminar and annual meeting of the regional commissioner PEI PFI XIX South Sulawesi VL - 5 ID - Subekti2008 ER - TY - JOUR AU - Marr, D. L. AU - Marshall, M. L. PY - 2006 DA - 2006// TI - The role of fungal pathogens in flower size and seed mass variation in three species of Hydrophyllum (Hydrophyllaceae) JO - Am J Bot VL - 93 UR - https://doi.org/10.3732/ajb.93.3.389 DO - 10.3732/ajb.93.3.389 ID - Marr2006 ER - TY - JOUR AU - Pracros, P. AU - Renaudin, J. AU - Eveillard, S. AU - Mouras, A. AU - Hernould, M. PY - 2006 DA - 2006// TI - Tomato flower abnormalities induced by stolbur phytoplasma infection are associated with changes of expression of floral development genes JO - Mol Plant-Microbe Interact VL - 19 UR - https://doi.org/10.1094/MPMI-19-0062 DO - 10.1094/MPMI-19-0062 ID - Pracros2006 ER - TY - JOUR AU - Singh, A. K. AU - Bhatt, B. P. PY - 2013 DA - 2013// TI - Occurrence of phytoplasma phyllody and witches' broom disease of faba bean in Bihar JO - J Environ Biol VL - 34 ID - Singh2013 ER - TY - STD TI - Sugano J, Melzer M, Pant A, Radovich T, Fukuda S, Migita S, et al. Field evaluations of tomato yellow leaf curl virus-resistant varieties for commercial production. Plant Dis. 2011. ID - ref11 ER - TY - JOUR AU - Kale, P. B. AU - Jadhav, P. V. AU - Wakekar, R. S. AU - Moharil, M. P. AU - Deshmukh, A. G. AU - Dudhare, M. S. PY - 2016 DA - 2016// TI - Cytological behaviour of floral organs and in silico characterization of differentially expressed transcript-derived fragments associated with ‘floral bud distortion’in soybean JO - J Genet VL - 95 UR - https://doi.org/10.1007/s12041-016-0693-3 DO - 10.1007/s12041-016-0693-3 ID - Kale2016 ER - TY - CHAP AU - Dhingra, K. L. AU - Chenulu, V. V. PY - 1983 DA - 1983// TI - Symptomatology and transmission of witches' broom disease of soybean in India BT - Current science (India) ID - Dhingra1983 ER - TY - JOUR AU - Thorat, V. AU - More, V. AU - Jadhav, P. AU - Mane, S. S. AU - Nandanwar, R. S. AU - Surayavanshi, M. PY - 2016 DA - 2016// TI - First report of a 16SrII-D group Phytoplasma associated with witches’-broom disease of soybean (Glycine max) in Maharashtra, India JO - Plant Dis VL - 100 UR - https://doi.org/10.1094/PDIS-05-16-0741-PDN DO - 10.1094/PDIS-05-16-0741-PDN ID - Thorat2016 ER - TY - JOUR AU - Kumar, S. AU - Sharma, P. AU - Sharma, S. AU - Rao, G. P. PY - 2015 DA - 2015// TI - Mixed infection and natural spread of ‘Candidatus Phytoplasma asteris’ and Mungbean yellow mosaic India virus affecting soya bean crop in India JO - J Phytopathol VL - 163 UR - https://doi.org/10.1111/jph.12336 DO - 10.1111/jph.12336 ID - Kumar2015 ER - TY - STD TI - K. Subramanya Sastry. Seed-borne plant virus diseases. Springer India 2013, Springer Science & Business Media. ISBN 978-81-322-0812-9. http://www.soybeancheckoffresearch.org/DetailsbyPaperid.php?id_Paper=1144. Accessed August 2014. UR - http://www.soybeancheckoffresearch.org/DetailsbyPaperid.php?id_Paper=1144 ID - ref16 ER - TY - JOUR AU - Golnaraghi, A. R. AU - Shahraeen, N. AU - Pourrahim, R. AU - Farzadfar, S. AU - Ghasemi, A. PY - 2004 DA - 2004// TI - Occurrence and relative incidence of viruses infecting soybeans in Iran JO - Plant Dis VL - 88 UR - https://doi.org/10.1094/PDIS.2004.88.10.1069 DO - 10.1094/PDIS.2004.88.10.1069 ID - Golnaraghi2004 ER - TY - STD TI - Rahimian H, Hamdollah-Zadeh A, Montazeri M. Viruses associated with the soybean pod set failure syndrome in Iran. In Proceedings of the 12th Iranian Plant Protection Congress 2–7 September 1995. Karadj (Iran Islamic Republic). 1995. ID - ref18 ER - TY - JOUR AU - Wong, C. E. AU - Singh, M. B. AU - Bhalla, P. L. PY - 2009 DA - 2009// TI - Molecular processes underlying the floral transition in the soybean shoot apical meristem JO - Plant J VL - 57 UR - https://doi.org/10.1111/j.1365-313X.2008.03730.x DO - 10.1111/j.1365-313X.2008.03730.x ID - Wong2009 ER - TY - JOUR AU - Severin, A. J. AU - Woody, J. L. AU - Bolon, Y. T. AU - Joseph, B. AU - Diers, B. W. AU - Farmer, A. D. PY - 2010 DA - 2010// TI - RNA-Seq atlas of Glycine max: a guide to the soybean transcriptome JO - BMC Plant Biol VL - 10 UR - https://doi.org/10.1186/1471-2229-10-160 DO - 10.1186/1471-2229-10-160 ID - Severin2010 ER - TY - JOUR AU - Jung, C. H. AU - Wong, C. E. AU - Singh, M. B. AU - Bhalla, P. L. PY - 2012 DA - 2012// TI - Comparative genomic analysis of soybean flowering genes JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0038250 DO - 10.1371/journal.pone.0038250 ID - Jung2012 ER - TY - JOUR AU - Schmutz, J. AU - Cannon, S. B. AU - Schlueter, J. AU - Ma, J. AU - Mitros, T. AU - Nelson, W. PY - 2010 DA - 2010// TI - Genome sequence of the palaeopolyploid soybean JO - Nature VL - 463 UR - https://doi.org/10.1038/nature08670 DO - 10.1038/nature08670 ID - Schmutz2010 ER - TY - JOUR AU - Liu, S. C. AU - Jin, J. Q. AU - Ma, J. Q. AU - Yao, M. Z. AU - Ma, C. L. AU - Li, C. F. PY - 2016 DA - 2016// TI - Transcriptomic analysis of tea plant responding to drought stress and recovery JO - PLoS One VL - 11 UR - https://doi.org/10.1371/journal.pone.0147306 DO - 10.1371/journal.pone.0147306 ID - Liu2016 ER - TY - JOUR AU - Iovieno, P. AU - Punzo, P. AU - Guida, G. AU - Mistretta, C. AU - Oosten, M. J. AU - Nurcato, R. PY - 2016 DA - 2016// TI - Transcriptomic changes drive physiological responses to progressive drought stress and rehydration in tomato JO - Front Plant Sci VL - 7 UR - https://doi.org/10.3389/fpls.2016.00371 DO - 10.3389/fpls.2016.00371 ID - Iovieno2016 ER - TY - JOUR AU - Fu, L. AU - Ding, Z. AU - Han, B. AU - Hu, W. AU - Li, Y. AU - Zhang, J. PY - 2016 DA - 2016// TI - Physiological investigation and transcriptome analysis of polyethylene glycol (PEG)-induced dehydration stress in cassava JO - Int J Mol Sci VL - 17 UR - https://doi.org/10.3390/ijms17030283 DO - 10.3390/ijms17030283 ID - Fu2016 ER - TY - JOUR AU - Shin, J. H. AU - Vaughn, J. N. AU - Abdel-Haleem, H. AU - Chavarro, C. AU - Abernathy, B. AU - Kim, K. PY - 2015 DA - 2015// TI - Transcriptomic changes due to water deficit define a general soybean response and accession-specific pathways for drought avoidance JO - BMC Plant Biol VL - 15 UR - https://doi.org/10.1186/s12870-015-0422-8 DO - 10.1186/s12870-015-0422-8 ID - Shin2015 ER - TY - JOUR AU - Bove, J. M. PY - 1981 DA - 1981// TI - Mycoplasma infections of plants JO - Isr J Med Sci VL - 17 ID - Bove1981 ER - TY - JOUR AU - Panchy, N. AU - Lehti-Shiu, M. AU - Shiu, S. H. PY - 2016 DA - 2016// TI - Evolution of gene duplication in plants JO - Plant Physiol VL - 171 ID - Panchy2016 ER - TY - JOUR AU - Yang, S. AU - Tang, F. AU - Zhu, H. PY - 2014 DA - 2014// TI - Alternative splicing in plant immunity JO - Int J Mol Sci VL - 15 UR - https://doi.org/10.3390/ijms150610424 DO - 10.3390/ijms150610424 ID - Yang2014 ER - TY - JOUR AU - Kazemian, M. AU - Ren, M. AU - Lin, J. X. AU - Liao, W. AU - Spolski, R. AU - Leonard, W. J. PY - 2015 DA - 2015// TI - Comprehensive assembly of novel transcripts from unmapped human RNA-Seq data and their association with cancer JO - Mol Syst Biol VL - 11 UR - https://doi.org/10.15252/msb.156172 DO - 10.15252/msb.156172 ID - Kazemian2015 ER - TY - JOUR AU - Palmieri, N. AU - Nolte, V. AU - Suvorov, A. AU - Kosiol, C. AU - Schlötterer, C. PY - 2012 DA - 2012// TI - Evaluation of different reference based annotation strategies using RNA-Seq–a case study in Drososphila pseudoobscura JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0046415 DO - 10.1371/journal.pone.0046415 ID - Palmieri2012 ER - TY - JOUR AU - Bai, X. AU - Zhang, J. AU - Ewing, A. AU - Miller, S. A. AU - Radek, A. J. AU - Shevchenko, D. V. PY - 2006 DA - 2006// TI - Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts JO - J Bacteriol VL - 188 UR - https://doi.org/10.1128/JB.188.10.3682-3696.2006 DO - 10.1128/JB.188.10.3682-3696.2006 ID - Bai2006 ER - TY - JOUR AU - Marcone, C. AU - Neimark, H. AU - Ragozzino, A. AU - Lauer, U. AU - Seemüller, E. PY - 1999 DA - 1999// TI - Chromosome sizes of phytoplasmas composing major phylogenetic groups and subgroups JO - Phytopathology VL - 89 UR - https://doi.org/10.1094/PHYTO.1999.89.9.805 DO - 10.1094/PHYTO.1999.89.9.805 ID - Marcone1999 ER - TY - JOUR AU - Mou, H. Q. AU - Lu, J. AU - Zhu, S. F. AU - Lin, C. L. AU - Tian, G. Z. AU - Xu, X. PY - 2013 DA - 2013// TI - Transcriptomic analysis of paulownia infected by paulownia witches'-broom phytoplasma JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0077217 DO - 10.1371/journal.pone.0077217 ID - Mou2013 ER - TY - JOUR AU - Lu, Y. T. AU - Li, M. Y. AU - Cheng, K. T. AU - Tan, C. M. AU - Su, L. W. AU - Lin, W. Y. PY - 2014 DA - 2014// TI - Transgenic plants that express the phytoplasma effector SAP11 show altered phosphate starvation and defense responses JO - Plant Physiol VL - 164 UR - https://doi.org/10.1104/pp.113.229740 DO - 10.1104/pp.113.229740 ID - Lu2014 ER - TY - STD TI - Kube M, Mitrovic J, Duduk B, Rabus R, Seemüller E. Current view on phytoplasma genomes and encoded metabolism. Sci World J. 2012;2012. ID - ref36 ER - TY - JOUR AU - Andersen, M. T. AU - Liefting, L. W. AU - Havukkala, I. AU - Beever, R. E. PY - 2013 DA - 2013// TI - Comparison of the complete genome sequence of two closely related isolates of ‘Candidatus Phytoplasma australiense’reveals genome plasticity JO - BMC Genomics VL - 14 UR - https://doi.org/10.1186/1471-2164-14-529 DO - 10.1186/1471-2164-14-529 ID - Andersen2013 ER - TY - JOUR AU - Seemüller, E. AU - Sule, S. AU - Kube, M. AU - Jelkmann, W. AU - Schneider, B. PY - 2013 DA - 2013// TI - The AAA+ ATPases and HflB/FtsH proteases of ‘Candidatus Phytoplasma Mali’: phylogenetic diversity, membrane topology, and relationship to strain virulence JO - Mol Plant-Microbe Interact VL - 26 UR - https://doi.org/10.1094/MPMI-09-12-0221-R DO - 10.1094/MPMI-09-12-0221-R ID - Seemüller2013 ER - TY - STD TI - Orlovskis Z. Role of phytoplasma effector proteins in plant development and plant-insect interactions (doctoral dissertation, University of East Anglia). 2017. ID - ref39 ER - TY - JOUR AU - Yang, J. AU - Tian, L. AU - Sun, M. X. AU - Huang, X. Y. AU - Zhu, J. AU - Guan, Y. F. PY - 2013 DA - 2013// TI - AUXIN RESPONSE FACTOR17 is essential for pollen wall pattern formation in Arabidopsis JO - Plant Physiol VL - 162 UR - https://doi.org/10.1104/pp.113.214940 DO - 10.1104/pp.113.214940 ID - Yang2013 ER - TY - JOUR AU - Wakekar, R. S. AU - Jadhav, P. V. AU - Kale, P. B. AU - Moharil, M. P. AU - Nandanwar, R. S. AU - Mane, S. S. PY - 2018 DA - 2018// TI - Pollen dysfunction causes ‘floral bud Distortion’in Indian soybean (Glycine max) JO - Agricultural Research VL - 7 UR - https://doi.org/10.1007/s40003-018-0288-8 DO - 10.1007/s40003-018-0288-8 ID - Wakekar2018 ER - TY - JOUR AU - Kaminska, M. AU - Berniak, H. AU - Kaminski, P. PY - 2012 DA - 2012// TI - Failure of flower bud formation in Brassica plants associated with phytoplasma infection JO - J Agric Sci VL - 4 ID - Kaminska2012 ER - TY - JOUR AU - Sugio, A. AU - MacLean, A. M. AU - Grieve, V. M. AU - Hogenhout, S. A. PY - 2011 DA - 2011// TI - Phytoplasma protein effector SAP11 enhances insect vector reproduction by manipulating plant development and defense hormone biosynthesis JO - Proc Natl Acad Sci VL - 108 UR - https://doi.org/10.1073/pnas.1105664108 DO - 10.1073/pnas.1105664108 ID - Sugio2011 ER - TY - JOUR AU - Sugio, A. AU - MacLean, A. M. AU - Kingdom, H. N. AU - Grieve, V. M. AU - Manimekalai, R. AU - Hogenhout, S. A. PY - 2011 DA - 2011// TI - Diverse targets of phytoplasma effectors: from plant development to defense against insects JO - Annu Rev Phytopathol VL - 49 UR - https://doi.org/10.1146/annurev-phyto-072910-095323 DO - 10.1146/annurev-phyto-072910-095323 ID - Sugio2011 ER - TY - JOUR AU - Anthouard, R. AU - DiRita, V. J. PY - 2015 DA - 2015// TI - Chemical biology applied to the study of bacterial pathogens JO - Infect Immun VL - 83 UR - https://doi.org/10.1128/IAI.02021-14 DO - 10.1128/IAI.02021-14 ID - Anthouard2015 ER - TY - STD TI - Lenz RR, Dai W. Mapping X-disease Phytoplasma resistance in Prunus virginiana. Front Plant Sci. 2017;8. ID - ref46 ER - TY - JOUR AU - Jarausch, W. AU - Bisognin, C. AU - Schneider, B. AU - Grando, M. S. AU - Velasco, R. AU - Seemüller, E. PY - 2007 DA - 2007// TI - Breeding of apple rootstocks resistant to Candidatus phytoplasma Mali JO - Bulletin of Insectology VL - 60 ID - Jarausch2007 ER - TY - JOUR AU - Gurr, G. M. AU - Johnson, A. C. AU - Ash, G. J. AU - Wilson, B. A. AU - Ero, M. M. AU - Pilotti, C. A. PY - 2016 DA - 2016// TI - Coconut lethal yellowing diseases: a phytoplasma threat to palms of global economic and social significance JO - Front Plant Sci VL - 7 UR - https://doi.org/10.3389/fpls.2016.01521 DO - 10.3389/fpls.2016.01521 ID - Gurr2016 ER - TY - JOUR AU - Smart, C. D. AU - Schneider, B. AU - Blomquist, C. L. AU - Guerra, L. J. AU - Harrison, N. A. AU - Ahrens, U. PY - 1996 DA - 1996// TI - Phytoplasma-specific PCR primers based on sequences of the 16S-23S rRNA spacer region JO - Appl Environ Microbiol VL - 62 ID - Smart1996 ER - TY - JOUR AU - Gundersen, D. E. AU - Lee, I. M. AU - Schaff, D. A. AU - Harrison, N. A. AU - Chang, C. J. AU - Davis, R. E. PY - 1996 DA - 1996// TI - Genomic diversity and differentiation among phytoplasma strains in 16S rRNA groups I (aster yellows and related phytoplasmas) and III (X-disease and related phytoplasmas) JO - Int J Syst Evol Microbiol VL - 46 ID - Gundersen1996 ER - TY - JOUR AU - Zou, C. AU - Wang, P. AU - Xu, Y. PY - 2016 DA - 2016// TI - Bulked sample analysis in genetics, genomics and crop improvement JO - Plant Biotechnol J VL - 14 UR - https://doi.org/10.1111/pbi.12559 DO - 10.1111/pbi.12559 ID - Zou2016 ER - TY - BOOK AU - Andrew, S. PY - 2010 DA - 2010// TI - FastQC: a quality control tool for high throughput sequence data ID - Andrew2010 ER - TY - JOUR AU - Bolger, A. M. AU - Lohse, M. AU - Usadel, B. PY - 2014 DA - 2014// TI - Trimmomatic: a flexible trimmer for Illumina sequence data JO - Bioinformatics VL - 30 UR - https://doi.org/10.1093/bioinformatics/btu170 DO - 10.1093/bioinformatics/btu170 ID - Bolger2014 ER - TY - JOUR AU - Haas, B. J. AU - Papanicolaou, A. AU - Yassour, M. AU - Grabherr, M. AU - Blood, P. D. AU - Bowden, J. PY - 2013 DA - 2013// TI - De novo transcript sequence reconstruction from RNA-seq using the trinity platform for reference generation and analysis JO - Nat Protoc VL - 8 UR - https://doi.org/10.1038/nprot.2013.084 DO - 10.1038/nprot.2013.084 ID - Haas2013 ER - TY - JOUR AU - Huang, X. AU - Madan, A. PY - 1999 DA - 1999// TI - CAP3: A DNA sequence assembly program JO - Genome Res VL - 9 UR - https://doi.org/10.1101/gr.9.9.868 DO - 10.1101/gr.9.9.868 ID - Huang1999 ER - TY - JOUR AU - Langmead, B. AU - Trapnell, C. AU - Pop, M. AU - Salzberg, S. L. PY - 2009 DA - 2009// TI - Ultrafast and memory-efficient alignment of short DNA sequences to the human genome JO - Genome Biol VL - 10 UR - https://doi.org/10.1186/gb-2009-10-3-r25 DO - 10.1186/gb-2009-10-3-r25 ID - Langmead2009 ER - TY - JOUR AU - Li, B. AU - Dewey, C. N. PY - 2011 DA - 2011// TI - RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome JO - BMC bioinformatics. VL - 12 UR - https://doi.org/10.1186/1471-2105-12-323 DO - 10.1186/1471-2105-12-323 ID - Li2011 ER - TY - JOUR AU - Robinson, M. D. AU - McCarthy, D. J. AU - Smyth, G. K. PY - 2010 DA - 2010// TI - edgeR: a Bioconductor package for differential expression analysis of digital gene expression data JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btp616 DO - 10.1093/bioinformatics/btp616 ID - Robinson2010 ER - TY - JOUR AU - Robinson, M. D. AU - Oshlack, A. PY - 2010 DA - 2010// TI - A scaling normalization method for differential expression analysis of RNA-seq data JO - Genome Biol VL - 11 UR - https://doi.org/10.1186/gb-2010-11-3-r25 DO - 10.1186/gb-2010-11-3-r25 ID - Robinson2010 ER - TY - JOUR AU - Tarazona, S. AU - García-Alcalde, F. AU - Dopazo, J. AU - Ferrer, A. AU - Conesa, A. PY - 2011 DA - 2011// TI - Differential expression in RNA-seq: a matter of depth JO - Genome Res VL - 21 UR - https://doi.org/10.1101/gr.124321.111 DO - 10.1101/gr.124321.111 ID - Tarazona2011 ER - TY - JOUR AU - Sotak, M. AU - Czeranková, O. AU - Klein, D. AU - Jurčacková, Z. AU - Li, L. AU - Čellárová, E. PY - 2016 DA - 2016// TI - Comparative transcriptome reconstruction of four Hypericum species focused on Hypericin biosynthesis JO - Front Plant Sci VL - 7 UR - https://doi.org/10.3389/fpls.2016.01039 DO - 10.3389/fpls.2016.01039 ID - Sotak2016 ER - TY - JOUR AU - Wang, Y. AU - Guo, Z. Y. AU - Sun, X. AU - Lu, S. B. AU - Xu, W. J. AU - Zhao, Q. PY - 2016 DA - 2016// TI - Identification of changes in gene expression of rats after sensory and motor nerves injury JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep26579 DO - 10.1038/srep26579 ID - Wang2016 ER - TY - JOUR AU - Camacho, C. AU - Coulouris, G. AU - Avagyan, V. AU - Ma, N. AU - Papadopoulos, J. AU - Bealer, K. PY - 2009 DA - 2009// TI - BLAST+: architecture and applications JO - BMC bioinformatics VL - 10 UR - https://doi.org/10.1186/1471-2105-10-421 DO - 10.1186/1471-2105-10-421 ID - Camacho2009 ER - TY - JOUR AU - Conesa, A. AU - Götz, S. AU - García-Gómez, J. M. AU - Terol, J. AU - Talón, M. AU - Robles, M. PY - 2005 DA - 2005// TI - Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti610 DO - 10.1093/bioinformatics/bti610 ID - Conesa2005 ER - TY - STD TI - Jin J, Tian F, Yang DC, Meng YQ, Kong L, Luo J, et al. PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants. Nucleic Acids Res 2016:gkw982. ID - ref65 ER - TY - JOUR AU - Thiel, T. AU - Michalek, W. AU - Varshney, R. AU - Graner, A. PY - 2003 DA - 2003// TI - Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.) JO - Theor Appl Genet VL - 106 UR - https://doi.org/10.1007/s00122-002-1031-0 DO - 10.1007/s00122-002-1031-0 ID - Thiel2003 ER - TY - JOUR AU - Untergasser, A. AU - Cutcutache, I. AU - Koressaar, T. AU - Ye, J. AU - Faircloth, B. C. AU - Remm, M. PY - 2012 DA - 2012// TI - Primer3—new capabilities and interfaces JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gks596 DO - 10.1093/nar/gks596 ID - Untergasser2012 ER - TY - JOUR AU - Uitdewilligen, J. G. AU - Wolters, A. M. AU - Bjorn, B. AU - Borm, T. J. AU - Visser, R. G. AU - Eck, H. J. PY - 2013 DA - 2013// TI - A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0062355 DO - 10.1371/journal.pone.0062355 ID - Uitdewilligen2013 ER - TY - JOUR AU - Liu, J. AU - McCleland, M. AU - Stawiski, E. W. AU - Gnad, F. AU - Mayba, O. AU - Haverty, P. M. PY - 2014 DA - 2014// TI - Integrated exome and transcriptome sequencing reveals ZAK isoform usage in gastric cancer JO - Nat Commun VL - 5 UR - https://doi.org/10.1038/ncomms4830 DO - 10.1038/ncomms4830 ID - Liu2014 ER - TY - JOUR AU - Yu, X. AU - Sun, S. PY - 2013 DA - 2013// TI - Comparing a few SNP calling algorithms using low-coverage sequencing data JO - BMC bioinformatics. VL - 14 UR - https://doi.org/10.1186/1471-2105-14-274 DO - 10.1186/1471-2105-14-274 ID - Yu2013 ER - TY - JOUR AU - Li, H. AU - Durbin, R. PY - 2009 DA - 2009// TI - Fast and accurate short read alignment with burrows–wheeler transform JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp324 DO - 10.1093/bioinformatics/btp324 ID - Li2009 ER - TY - JOUR AU - Li, H. AU - Handsaker, B. AU - Wysoker, A. AU - Fennell, T. AU - Ruan, J. AU - Homer, N. PY - 2009 DA - 2009// TI - The sequence alignment/map format and SAMtools JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp352 DO - 10.1093/bioinformatics/btp352 ID - Li2009 ER - TY - JOUR AU - Cingolani, P. AU - Platts, A. AU - Wang, L. L. AU - Coon, M. AU - Nguyen, T. AU - Wang, L. PY - 2012 DA - 2012// TI - A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3 JO - Fly (Austin) VL - 6 UR - https://doi.org/10.4161/fly.19695 DO - 10.4161/fly.19695 ID - Cingolani2012 ER - TY - JOUR AU - Livak, K. J. AU - Schmittgen, T. D. PY - 2001 DA - 2001// TI - Analysis of relative gene expression data using real-time quantitative PCR and the 2− ΔΔCT method JO - Methods VL - 25 UR - https://doi.org/10.1006/meth.2001.1262 DO - 10.1006/meth.2001.1262 ID - Livak2001 ER -