Table 1 Summary of NGS data of T1 samples
Replicate | Sample | Paired-end clean reads (fwd + rev) | Unmapped reads (%) | Mapped reads (%) | Contigs | GC (%) |
|---|---|---|---|---|---|---|
1 | Control | 115,806,338 | 47,978,266 (41.50%) | 67,828,072 (58.50%) | 68,042,571 | 50.4 |
3 d.p.i | 116,036,532 | 48,074,890 (43.17%) | 63,288,794 (56.83%) | 63,473,939 | 50.3 | |
7 d.p.i | 99,856,770 | 45,959,348 (46.03%) | 62,010,298 (53.97%) | 62,204,733 | 49.0 | |
11 d.p.i | 96,334,214 | 39,143,968 (40.63%) | 55,881,644 (59.37%) | 56,049,226 | 49.9 | |
2 | Control | 111,852,414 | 47,513,392 (42.48%) | 64,339,022 (57.52%) | 64,545,409 | 50.1 |
3 d.p.i | 111,363,684 | 50,771,616 (45.59%) | 65,264,916 (54.41%) | 65,460,036 | 49.6 | |
7 d.p.i | 107,969,646 | 42,963,067 (39.79%) | 56,893,703 (60.21%) | 57,072,615 | 48.8 | |
11 d.p.i | 95,025,612 | 39,734,017 (41.81%) | 56,600,197 (58.19%) | 56,777,437 | 49.3 |