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Table 3 Functional categories for up- and down-regulated genes in the DNB module of rice flower development

From: Genome-wide dynamic network analysis reveals a critical transition state of flower development in Arabidopsis

Gene name

Fold change

Transition state

Description

Os04g0417400

6.80

up-regulated

U box domain containing protein.

LOC4340069

1.93

up-regulated

DNA-binding protein (Homeodomain-leucine zipper transcription factor)

LOC4346839

1.82

up-regulated

Disease resistance protein family protein.disease resistance protein RGA5-like

LOC4341399

1.74

up-regulated

pollen-specific leucine-rich repeat extensin-like protein 1

LOC4326659

1.59

up-regulated

Cytochrome P450 monooxygenase CYP72A5

LOC4338660

1.56

up-regulated

UDP-sulfoquinovose synthase, chloroplast precursor (Sulfolipid biosynthesis protein)

LOC4345661

1.43

up-regulated

Myb-like protein (transcription factor CSA-like)

LOC4324767

1.36

up-regulated

TPR-like domain containing protein.

LOC4339280

1.36

up-regulated

Cyclin-like F-box domain containing protein (F-box protein At5g46170)

LOC4332901

1.32

up-regulated

Sugar transporter-like protein

LOC4324342

1.32

up-regulated

Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein

LOC4351030

1.32

up-regulated

Hypothetical protein

LOC4341957

1.31

up-regulated

Macrophage migration inhibitory factor family protein

LOC112936214

1.32

up-regulated

eukaryotic cysteine peptidase active site family protein (putative F-box protein At5g15660)

LOC4324302

1.37

up-regulated

Myb-related protein 5 (transcription factor MYB59)

LOC4338652

1.31

up-regulated

ABC transporter G family member 23

LOC4338416

0.79

down-regulated

ABC-1 domain containing protein (protein ACTIVITY OF BC1 COMPLEX KINASE 3, chloroplastic)

LOC4329899

0.71

down-regulated

Galactosyltransferase associated protein kinase p58/GTA (Cell division cycle 2-like 2)

LOC4348579

0.78

down-regulated

Protein kinase APK1B (EC 2.7.1.-)

LOC4338491

0.76

down-regulated

Ribulose bisphosphate carboxylase

LOC4350151

0.76

down-regulated

probable sucrose-phosphate synthase 5

LOC4349274

0.75

down-regulated

Zn-finger, RING domain containing protein (NEP1-interacting protein 1)

LOC4335569

0.69

down-regulated

Helicase-like protein

LOC4324503

0.57

down-regulated

Ribosomal protein S8 family protein.

LOC4335392

0.49

down-regulated

Allergen V5/Tpx-1 related family protein (pathogenesis-related protein 1)

LOC9272032

0.35

down-regulated

probable LRR receptor-like serine/ threonine-protein kinase At1g51810