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Table 2 Significance of GO terms obtained by R package topGO

From: Genome-wide dynamic network analysis reveals a critical transition state of flower development in Arabidopsis

GO GO.ID Term Annotated P-value
biological process GO:0044282 small molecule catabolic process 196 0.0044
GO:0009832 plant-type cell wall biogenesis 174 0.00428
GO:0006643 membrane lipid metabolic process 101 0.00801
GO:0009640 photomorphogenesis 95 0.00081
GO:0032101 regulation of response to external stimu... 85 0.00713
GO:0090691 formation of plant organ boundary 16 0.00943
GO:0010244 response to low fluence blue light stimu... 9 0.00719
GO:0010264 myo-inositol hexakisphosphate biosynthet... 8 0.00617
GO:0000967 rRNA 5′-end processing 7 0.00401
GO:0052746 inositol phosphorylation 5 0.00133
cellular component GO:0030119 AP-type membrane coat adaptor complex 18 0.015
GO:0031304 intrinsic component of mitochondrial inn... 18 0.052
GO:0009531 secondary cell wall 16 0.053
GO:0005880 nuclear microtubule 7 0.031
GO:0016442 RISC complex 5 0.047
GO:0031332 RNAi effector complex 5 0.047
GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex 3 0.014
GO:0032541 cortical endoplasmic reticulum 2 0.022
GO:0000312 plastid small ribosomal subunit 2 0.041
GO:0005971 ribonucleoside-diphosphate reductase com... 2 0.051
molecular function GO:0099516 ion antiporter activity 94 0.0125
GO:0015114 phosphate ion transmembrane transporter ... 26 0.0019
GO:0004867 serine-type endopeptidase inhibitor acti... 22 0.0018
GO:0031418 L-ascorbic acid binding 13 0.008
GO:0048038 quinone binding 10 0.0031
GO:0005242 inward rectifier potassium channel activ... 10 0.013
GO:0016639 oxidoreductase activity, acting on the C... 6 0.0041
GO:0050284 sinapate 1-glucosyltransferase activity 4 0.004
GO:0004148 dihydrolipoyl dehydrogenase activity 4 0.0069
GO:0016629 12-oxophytodienoate reductase activity 3 0.0082