Table 2 Significance of GO terms obtained by R package topGO
GO | GO.ID | Term | Annotated | P-value |
|---|---|---|---|---|
biological process | GO:0044282 | small molecule catabolic process | 196 | 0.0044 |
GO:0009832 | plant-type cell wall biogenesis | 174 | 0.00428 | |
GO:0006643 | membrane lipid metabolic process | 101 | 0.00801 | |
GO:0009640 | photomorphogenesis | 95 | 0.00081 | |
GO:0032101 | regulation of response to external stimu... | 85 | 0.00713 | |
GO:0090691 | formation of plant organ boundary | 16 | 0.00943 | |
GO:0010244 | response to low fluence blue light stimu... | 9 | 0.00719 | |
GO:0010264 | myo-inositol hexakisphosphate biosynthet... | 8 | 0.00617 | |
GO:0000967 | rRNA 5′-end processing | 7 | 0.00401 | |
GO:0052746 | inositol phosphorylation | 5 | 0.00133 | |
cellular component | GO:0030119 | AP-type membrane coat adaptor complex | 18 | 0.015 |
GO:0031304 | intrinsic component of mitochondrial inn... | 18 | 0.052 | |
GO:0009531 | secondary cell wall | 16 | 0.053 | |
GO:0005880 | nuclear microtubule | 7 | 0.031 | |
GO:0016442 | RISC complex | 5 | 0.047 | |
GO:0031332 | RNAi effector complex | 5 | 0.047 | |
GO:0034098 | VCP-NPL4-UFD1 AAA ATPase complex | 3 | 0.014 | |
GO:0032541 | cortical endoplasmic reticulum | 2 | 0.022 | |
GO:0000312 | plastid small ribosomal subunit | 2 | 0.041 | |
GO:0005971 | ribonucleoside-diphosphate reductase com... | 2 | 0.051 | |
molecular function | GO:0099516 | ion antiporter activity | 94 | 0.0125 |
GO:0015114 | phosphate ion transmembrane transporter ... | 26 | 0.0019 | |
GO:0004867 | serine-type endopeptidase inhibitor acti... | 22 | 0.0018 | |
GO:0031418 | L-ascorbic acid binding | 13 | 0.008 | |
GO:0048038 | quinone binding | 10 | 0.0031 | |
GO:0005242 | inward rectifier potassium channel activ... | 10 | 0.013 | |
GO:0016639 | oxidoreductase activity, acting on the C... | 6 | 0.0041 | |
GO:0050284 | sinapate 1-glucosyltransferase activity | 4 | 0.004 | |
GO:0004148 | dihydrolipoyl dehydrogenase activity | 4 | 0.0069 | |
GO:0016629 | 12-oxophytodienoate reductase activity | 3 | 0.0082 |