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Table 1 Functional categories for up- and down-regulated genes in the DNB module of Arabidopsis flower development

From: Genome-wide dynamic network analysis reveals a critical transition state of flower development in Arabidopsis

Gene name Fold change Transition state Description
Transcription factors
 RAP2.6 0.73 down-regulated AP2/B3-like, related to AP2 6(RAP2.6)
 AGL46 0.19 down-regulated MADS box transcription factor
 AT2G31370 1.74 up-regulated Basic-leucine zipper transcription factor
 AT5G46030 2.12 up-regulated transcription elongation factor-like protein
 AT4G33280 0.71 down-regulated AP2/B3-like transcriptional factor family protein
 AT1G21580 1.66 up-regulated Zinc finger C-×8-C-×5-C-×3-H type family
 ZAP1 4.05 up-regulated zinc-dependent activator protein-1
 WRKY36 0.07 down-regulated WRKY DNA-binding protein
 AT1G59675 1.21 up-regulated F-box family protein
 NAP 2.37 up-regulated NAC-like, activated by AP3/PI(NAP)
 AT1G76590 1.63 up-regulated PLATZ transcription factor family protein
 RIE1 0.28 down-regulated RING-finger protein for embryogenesis
 AT4G25610 0.35 down-regulated C2H2-like zinc finger protein
Protein kinase activity
 AT3G46270 3.83 up-regulated receptor protein kinase-like protein
 AT3G15240 3.61 up-regulated Serine/threonine-protein kinase WNK
  (With No Lysine)-like protein
 AT1G67720 0.42 down-regulated Leucine-rich repeat protein kinase family protein
 AT3G23310 0.75 down-regulated AGC kinase family protein
Ras signaling pathway
 AGL46 0.19 down-regulated MADS box transcription factor
Plant hormone signal transduction
 SHY2 0.61 down-regulated AUX/IAA transcriptional regulator family protein
 AIR12 0.79 down-regulated auxin-induced in root cultures-like protein
 IAA18 1.98 up-regulated indole-3-acetic acid inducible 18
ABA signaling pathway
 HIS1–3 0.79 down-regulated histone H1–3
 SLAH2 1.22 up-regulated SLAC1 homologue 2
 AT4G25610 0.35 down-regulated C2H2-like zinc finger protein
 AT4G33280 0.71 down-regulated AP2/B3-like transcriptional factor family protein
 AT1G59675 1.21 up-regulated F-box family protein