Stages of cell wall biogenesis | Gene | Cotton ID | Arabidopsis ID | Biological process description | log2FC | padj |
---|---|---|---|---|---|---|
1. Pathways of substrate generation | MPG | Gh_D13G1445 | AT4G26850 | Mannose-1-phosphate guanylyltransferase | 1.3226 | 0.00074702 |
MPG | Gh_A04G0114 | AT4G26850 | Mannose-2-phosphate guanylyltransferase | 1.0154 | 0.0038664 | |
MPG | Gh_D05G3607 | AT4G26850 | Mannose-3-phosphate guanylyltransferase | 0.87197 | 0.016364 | |
PAL2 | Gh_D06G0758 | AT3G53260 | Phenylalanine ammonia-lyase 2 | −4.7679 | 0.031477 | |
COMT | Gh_D08G2702 | AT5G54160 | O-methyltransferase 1 | −2.1454 | 1.04E-05 | |
2. Polysaccharide synthases and glycosyl transferases | CSLD5 | Gh_D12G1289 | AT1G02730 | Cellulose synthase-like D5 | −1.8163 | 4.86E-06 |
CSLD5 | Gh_A12G1169 | −1.7886 | 0.00023721 | |||
CSA2 | Gh_D05G2313 | AT4G39350 | Cellulose synthase A2 | 0.94515 | 0.0088594 | |
UGT | Gh_A01G1073 | AT5G65550 | UDP-Glycosyltransferase superfamily protein | −1.0906 | 0.0034716 | |
UGT | Gh_A08G0702 | AT5G12890 | 1.3521 | 0.0044964 | ||
UGT2 | Gh_D02G0230 | AT1G05530 | UDP-glucosyl transferase 75B2 | 1.7995 | 0.04585 | |
UGT | Gh_A12G0455 | AT3G21780 | UDP-glucosyl transferase 71B6 | 1.1842 | 0.026133 | |
GT35 | Gh_A13G0714 | AT3G29320 | Glycosyl transferase, family 35 | −1.4741 | 0.0049557 | |
3. Secretion and targeting pathways | DJC24 | Gh_A11G1350 | AT4G12780 | DNA J protein C24 | 0.93104 | 0.032233 |
DJC24 | Gh_D03G0085 | AT2G17880 | 0.83759 | 0.036168 | ||
DJC75 | Gh_D05G2948 | AT4G09350 | DNA J protein C75 | 1.28 | 0.00014472 | |
DJC75 | Gh_A05G2646 | 1.3309 | 0.00072978 | |||
DNJ | Gh_D11G2787 | AT1G56300 | Chaperone DnaJ-domain superfamily protein | −2.2389 | 1.13E-09 | |
DNJ | Gh_D12G1290 | 0.84609 | 0.048095 | |||
DNJ | Gh_A11G2469 | −2.4022 | 2.03E-10 | |||
DNJ | Gh_A12G1170 | 1.2513 | 0.00021456 | |||
CML12 | Gh_Sca058336G01 | AT2G41100 | Calmodulin-like 12 | 1.1651 | 0.00085002 | |
CML12 | Gh_A05G1998 | 0.97104 | 0.03541 | |||
CML12 | Gh_D07G0377 | 0.9888 | 0.0122 | |||
CML30 | Gh_A11G3105 | AT2G15680 | Calmodulin-like 30 | 0.90289 | 0.019411 | |
CaBP | Gh_D01G1024 | AT1G73630 AT1G21550 | Calcium-binding EF-hand family protein | 1.1131 | 0.033647 | |
CaBP | Gh_D05G2265 | 1.1609 | 0.00045229 | |||
CaBP | Gh_A05G2022 | 1.0194 | 0.02553 | |||
4. Assembly, architecture, and growth | EXP5 | Gh_A10G1374 | AT3G29030 | Expansin A5 | 1.0678 | 0.015918 |
EXP8 | Gh_A05G2385 | AT2G40610 | Expansin A8 | 1.1376 | 0.00071198 | |
EXP8 | Gh_A05G3493 | 1.2031 | 0.00047444 | |||
EXP8 | Gh_A13G0050 | 1.0126 | 0.020419 | |||
EXP8 | Gh_D04G1924 | 1.0878 | 0.0013803 | |||
EXP8 | Gh_D05G2650 | 1.1075 | 0.0011793 | |||
EXP11 | Gh_A05G1576 | AT1G20190 | Expansin A11 | −1.5462 | 0.00073074 | |
XTH6 | Gh_A02G1426 | AT5G65730 | Xyloglucan endotransglucosylase/hydrolase 6 | 1.0514 | 0.0026916 | |
XTH6 | Gh_A11G1910 | 1.7179 | 0.0045263 | |||
XTH6 | Gh_D03G0294 | 1.3393 | 0.0049521 | |||
XTH6 | Gh_D11G2065 | 1.3826 | 4.78E-05 | |||
XTH7 | Gh_A11G0455 | AT4G37800 | Xyloglucan endotransglucosylase/hydrolase 7 | 1.0837 | 0.025074 | |
XTH16 | Gh_D05G1444 | AT3G23730 | Xyloglucan endotransglucosylase/hydrolase 16 | 1.0522 | 0.022367 | |
XTH28 | Gh_D02G1371 | AT1G14720 | Xyloglucan endotransglucosylase/hydrolase 28 | 0.96782 | 0.021935 | |
GH17 | Gh_A01G0299 | AT2G39640 | Glycosyl hydrolase family 17 protein | −2.7529 | 0.0037067 | |
GH17 | Gh_A05G0191 | −1.5162 | 0.0061888 | |||
GH17 | Gh_Sca016465G01 | −1.5804 | 0.023458 | |||
GH9B13 | Gh_D03G0779 | AT4G02290 | Glycosyl hydrolase 9B13 | −1.7925 | 0.0030996 | |
GH32 | Gh_A06G0779 | AT3G13790 | Glycosyl hydrolases family 32 protein | −1.6456 | 0.011594 | |
BG3 | Gh_D06G2277 | AT3G57240 | Beta-1,3-glucanase 3 | −2.4743 | 0.041623 | |
PLL | Gh_A03G0087 | AT5G47500 AT1G65570 AT4G13710 | Pectin lyase-like superfamily protein | −3.5536 | 1.03E-10 | |
PLL | Gh_A10G1707 | −4.0659 | 0.0010399 | |||
PLL | Gh_D03G1564 | −2.7246 | 7.22E-10 | |||
PLL | Gh_D05G3049 | −1.5099 | 0.011417 | |||
PLL | Gh_D12G2158 | −2.0499 | 0.00090874 | |||
GRP | Gh_D10G1727 | AT3G06780 | Glycine-rich protein | 1.0437 | 0.036293 | |
HRGP | Gh_A06G1050 | AT3G25690 | Hydroxyproline-rich glycoprotein family protein | −1.3346 | 0.027913 | |
HRGP | Gh_D11G0769 | AT3G02120 | −1.742 | 0.00058494 | ||
5. Differentiation and secondary wall formation | GER3 | Gh_A05G3949 | AT5G20630 | Germin 3 | −1.8095 | 0.012068 |
TPX1 | Gh_D05G1251 | AT1G65980 | Thioredoxin-dependent peroxidase 1 | 1.0563 | 0.029966 | |
PRX | Gh_A07G0275 | AT2G24800 | Peroxidase superfamily protein | −1.5209 | 0.00086829 | |
PRXR1 | Gh_A05G0507 | AT2G24800 | −2.0256 | 0.037339 | ||
PRX52 | Gh_A09G2334 | AT5G05340 | 1.4635 | 0.0033052 | ||
PRX53 | Gh_D08G2420 | AT5G06720 | −3.5232 | 0.0049155 | ||
6. Signaling and response mechanisms | PR5 | Gh_A01G1376 | AT4G38670 | Pathogenesis-related thaumatin superfamily protein | 1.3177 | 0.0017125 |
PR5 | Gh_A03G0347 | AT2G28790 | 1.6781 | 0.031724 | ||
PR5 | Gh_D12G0310 | AT4G38670 | 1.3177 | 0.0017125 | ||
LTPG | Gh_A08G0720 | AT1G55260 AT2G45180 | Lipid-transfer protein | 0.81073 | 0.046398 | |
LTPG | Gh_A08G1543 | 1.9495 | 0.022371 | |||
LTPG | Gh_D08G1844 | 1.2797 | 0.011976 | |||
LTPG | Gh_A07G0235 | 0.88365 | 0.016833 | |||
LYM2 | Gh_A12G0303 | AT2G17120 | Lysm domain GPI-anchored protein 2 precursor | −1.5656 | 0.040813 | |
LYM2 | Gh_D12G0361 | −1.4063 | 0.0022 | |||
7. Others | SKS4 | Gh_A06G1309 | AT4G22010 | SKU5 similar 4 | −1.3884 | 0.046854 |
SKS4 | Gh_D06G1637 | −1.8953 | 0.0019284 | |||
PMEI | Gh_A08G1555 | AT5G20740 AT5G62360 | Plant invertase/pectin methylesterase inhibitor superfamily protein | 1.3284 | 0.00058494 | |
PMEI | Gh_D03G1026 | −2.289 | 3.90E-13 | |||
PMEI | Gh_D05G0356 | 1.1199 | 0.0018667 | |||
PMEI | Gh_D08G1863 | 1.2925 | 0.00051083 | |||
CIF1 | Gh_D10G1801 | AT1G47960 | Cell wall / vacuolar inhibitor of fructosidase 1 | 1.1969 | 0.00078794 | |
CIF1 | Gh_A10G1552 | 0.85616 | 0.047869 |