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Table 3 Differentially expressed transcripts related to carbohydrate transport and metabolism

From: Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

Clustera

Transcript

At Locus

Pta Locus

Pla Locus

Annotationb

k1

Pp10265

#N/A

#N/A

#N/A

phosphoenolpyruvate carboxykinase

k1

Pp1126

#N/A

#N/A

#N/A

mannan endo- -beta-mannosidase

k1

Pp19154

#N/A

#N/A

#N/A

cytosolic triosephosphate isomerase

k1

Pp28580

AT4G37870.1

2A_all_VO_L_6958_T_66/101|m.15610

V1_2kb/polished_high/000086|m.144

phosphoenolpyruvate carboxykinase

k1

Pp42692

#N/A

#N/A

#N/A

udp-d-glucuronate 4-epimerase 2

k1

Pp45907

#N/A

#N/A

#N/A

triose phosphate phosphate non-green precursor

k1

Pp45908

#N/A

#N/A

#N/A

phosphate phosphoenolpyruvate translocator precursor

k2

Pp11437

#N/A

#N/A

#N/A

xyloglucan endotransglucosylase hydrolase

k2

Pp11438

#N/A

#N/A

P/miseq/c27580_g1_i1|m.27950

PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 26

k2

Pp12819

AT1G76160.1

2A_all_VO_L_1_T_165541/181832|m.14942

E1_2kb_2/polished_high/000754|m.928

L-ascorbate oxidase homolog SKU5 SIMILAR 5 (SKS5)

k2

Pp1567

#N/A

#N/A

#N/A

multicopper oxidase

k2

Pp18330

#N/A

6A_all_VO_L_6290_T_21/157|m.53348

#N/A

PREDICTED: sugar transport protein 13

k2

Pp18567

#N/A

#N/A

DCR/hiseq/c107286_g1_i1|m.126449

PREDICTED: probable pectinesterase 68

k2

Pp1892

#N/A

#N/A

#N/A

aldose 1-epimerase

k2

Pp20813

#N/A

#N/A

#N/A

hexose transporter

k2

Pp2456

#N/A

#N/A

#N/A

cellulose synthase

k2

Pp27962

#N/A

5A_I15_VO_L_1793_T_10/15|m.46809

#N/A

PREDICTED: CMP-sialic acid transporter 2

k2

Pp28117

#N/A

#N/A

#N/A

alcohol dehydrogenase

k2

Pp28964

#N/A

2A_all_VO_L_8976_T_26/41|m.15937

#N/A

Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative

k2

Pp30302

#N/A

#N/A

#N/A

glyoxalase i

k2

Pp32670

AT5G26340.1

#N/A

JASS/hiseq/c63525_g1_i1|m.64429

SUGAR TRANSPORT PROTEIN 13 (STP13), ATSTP13, MSS1

k2

Pp32960

#N/A

#N/A

#N/A

probable inositol transporter 2-like

k2

Pp34009

#N/A

3A_I18_VO_L_2_T_2368/136250|m.32448

Basket/c19128_g1_i1|m.26924

PREDICTED: L-ascorbate oxidase homolog

k2

Pp36526

#N/A

#N/A

#N/A

L-ascorbate oxidase-like protein

k2

Pp37397

#N/A

#N/A

#N/A

nadp-dependent malic enzyme

k2

Pp37548

AT4G39770.1

#N/A

M_S1/c25586_g1_i4|m.129341

trehalose-6-phosphate phosphatase

k2

Pp38427

#N/A

#N/A

#N/A

pyruvate kinase

k2

Pp38450

AT2G01850.1

2A_I15_VO_L_1_T_124932/133144|m.21738

V1_1kb_1/015976|m.720027

ENDOXYLOGLUCAN TRANSFERASE A3 (EXGT-A3), XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27 (XTH27), ATXTH27

k2

Pp38781

AT4G02290.1

2A_I15_VO_L_39_T_24/48|m.21781

S_2kb/polished_high/000346|m.477

glycosyl hydrolase 9B13, endoglucanase 17

k2

Pp38924

#N/A

#N/A

#N/A

xylose isomerase

k2

Pp39507

AT5G13870.1

6A_I20_VO_L_1_T_64241/133533|m.55411

E1_2kb_2/polished_high/002288|m.2304

ENDOXYLOGLUCAN TRANSFERASE A4 (EXGT-A4), XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 5 (XTH5)

k2

Pp42916

#N/A

5A_I12_VO_L_2_T_51143/53062|m.43159

#N/A

phosphoenolpyruvate carboxykinase

k2

Pp43330

#N/A

#N/A

#N/A

pectin methylesterase (pectinesterase)

k2

Pp43761

#N/A

#N/A

#N/A

glycosyl hydrolase-like protein

k2

Pp46170

AT3G13790.1

6A_all_VO_L_6326_T_78/89|m.53354

#N/A

Arabidopsis thaliana CELL WALL INVERTASE 1 (ATCWI1), ATBFRUCT1, ATCWINV1, CWI1

k2

Pp47826

AT5G03630.1

5A_all_VO_L_2839_T_31/70|m.40851

Wound/hiseq/c70186_g2_i1|m.47659

Pyridine nucleotide-disulphide oxidoreductase family protein (MDAR2), monodehydroascorbate reductase

k2

Pp6019

AT1G77210.1

#N/A

#N/A

SUGAR TRANSPORT PROTEIN 14 (STP14), ATSTP14

k2

Pp6337

#N/A

#N/A

#N/A

multicopper oxidase

k2

Pp8252

#N/A

#N/A

#N/A

hexose transporter

k2

Pp8434

AT1G68560.1

#N/A

S_2kb/polished_high/000741|m.810

ALPHA-XYLOSIDASE 1 (XYL1), ALTERED XYLOGLUCAN 3 (AXY3), THERMOINHIBITION RESISTANT GERMINATION 1 (TRG1), ATXYL1, GH31

k2

Pp8435

#N/A

#N/A

#N/A

alpha-xylosidase precursor

k2

Pp8535

#N/A

#N/A

#N/A

endoglucanase

k2

Pp9898

AT3G59480.1

#N/A

S_2kb_2/020091|m.629185

pfkB-like carbohydrate kinase family protein

k3

Pp15644

#N/A

#N/A

#N/A

beta glucosidase 43

k3

Pp21641

#N/A

#N/A

#N/A

mannan endo- -beta-mannosidase 7

k3

Pp23792

#N/A

6A_all_VO_L_13474_T_9/19|m.54026

V1_1kb_3/polished_high/001086|m.1085

senescence-associated protein 29

k4

Pp16423

#N/A

#N/A

#N/A

protein

k4

Pp24290

#N/A

#N/A

#N/A

beta-amylase 7-like

k4

Pp27124

#N/A

#N/A

#N/A

o-glycosyl hydrolases family 17 protein

k4

Pp34845

#N/A

#N/A

#N/A

phosphatidylinositol 4-kinase

k4

Pp9901

#N/A

#N/A

#N/A

alkaline alpha galactosidase i

k5

Pp14379

#N/A

#N/A

#N/A

O-Glycosyl hydrolases family 17 protein

k5

Pp1469

#N/A

#N/A

#N/A

unknown; unknown [Picea sitchensis]

k5

Pp32140

#N/A

#N/A

#N/A

brassinosteroid-regulated protein bru1

k5

Pp32141

#N/A

#N/A

SDN/miseq/c29601_g2_i2|m.39898

xyloglucan endotransglucosylase/hydrolase protein 24

k5

Pp32144

#N/A

#N/A

P/miseq/c33524_g1_i3|m.50829

PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23-like

k5

Pp39583

#N/A

#N/A

#N/A

thermostable beta-glucosidase

k5

Pp41586

#N/A

#N/A

#N/A

probable glycerophosphoryl diester phosphodiesterase 3-like

k5

Pp4948

#N/A

#N/A

#N/A

catalase

k5

Pp7568

#N/A

#N/A

#N/A

alcohol dehydrogenase

k5

Pp9008

AT1G22170.1

#N/A

E1/hiseq/c25131_g1_i3|m.5975

Phosphoglycerate mutase-like protein

k6

Pp23909

#N/A

#N/A

#N/A

mannan endo- -beta-mannosidase 7

k6

Pp876

#N/A

#N/A

#N/A

neurofilament protein h form h2

k6

Pp9495

#N/A

#N/A

#N/A

phospholipase c

k7

Pp26503

#N/A

#N/A

#N/A

galactinol synthase

k7

Pp2858

#N/A

#N/A

#N/A

succinate dehydrogenase

k7

Pp34900

#N/A

#N/A

#N/A

malate synthase

k7

Pp34906

AT5G03860.1

2A_I2_OT_comp27109_c0_seq3|m.23989

Neg_S1/c31207_g1_i2|m.108321

malate synthase

k7

Pp40679

#N/A

6A_I23_VO_L_1_T_44295/165398|m.58874

BRN/hiseq/c65594_g2_i2|m.37248

galactinol synthase

k7

Pp40719

AT3G24090.1

5A_all_VO_L_2_T_192437/409051|m.39335

E1/hiseq/c40068_g1_i1|m.27499

glucosamine-fructose-6-phosphate aminotransferase

k8

Pp14503

#N/A

#N/A

#N/A

beta-amylase 7-like

k8

Pp44718

#N/A

#N/A

#N/A

beta-amylase 7-like

k9

Pp32321

#N/A

#N/A

P/miseq/c26472_g1_i4|m.24888

endoxyloglucan transferase A4

k9

Pp39715

#N/A

3A_I18_VO_L_2_T_63095/136250|m.32723

#N/A

aldose 1-epimerase family protein

k9

Pp40720

#N/A

#N/A

#N/A

glucosamine--fructose-6-phosphate aminotransferase

k10

Pp240

#N/A

#N/A

#N/A

beta-glucosidase 44-like

k10

Pp30121

AT4G38970.1

3A_I16_VO_L_2_T_48696/60890|m.30958

V_1kb/017920|m.889708

fructose-bisphosphate aldolase 2

k11

Pp14541

#N/A

#N/A

#N/A

aldehyde dehydrogenase family 2 member mitochondrial-like

k11

Pp15288

#N/A

#N/A

#N/A

pyruvate decarboxylase isozyme

k11

Pp18297

#N/A

5A_I14_VO_L_947_T_33/56|m.45171

DCS1kb_1/003053|m.3985

PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8-like

k11

Pp23089

#N/A

#N/A

#N/A

polygalacturonase

k11

Pp35326

#N/A

#N/A

#N/A

protein

k11

Pp9001

#N/A

#N/A

#N/A

probable xyloglucan endotransglucosylase hydrolase protein 23

k11

Pp995

#N/A

#N/A

#N/A

myo-inositol-1-phosphate synthase

k11

Pp9981

AT1G32860.1

#N/A

#N/A

Glycosyl hydrolase superfamily protein

k12

Pp46622

AT4G25000.1

#N/A

SDN/miseq/c15856_g1_i1|m.11496

alpha-amylase-like

  1. aNumber of the cluster of expression that the transcript is associated with
  2. bOrder of preference for annotating each P. pinaster transcript after its homologs is: A. thaliana, P. taeda, P. lambertiana, and Blast2Go annotation against NCBI