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Table 1 RNA-seq and mapping statistics of P. pinaster embryo developmental stages

From: Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos

Embryo developmental stage

Day0

Day5

Day11

Day15

Day25

Read lengtha

PE 50 bp

PE 50 bp

PE 50 bp

PE 100 bp

PE 100 bp

Raw pairs of reads

72,632,308

55,550,140

44,898,746

75,433,086

70,463,384

Clean pairs of reads

72,472,236

55,413,990

44,803,454

66,982,962

62,388,454

Pairs of reads mapping in correct distance and orientation on P. taeda genome (Properly paired) used for assembly

61,626,536

45,975,573

37,763,000

60,334,604

55,692,971

Pairs of reads properly mapping on P. pinaster comprehensive transcriptome used for expression

44,178,974

33,660,866

28,187,082

41,345,428

35,994,032

  1. aPE = paired-end