Skip to main content

Table 1 Summary of sRNA sequencing and classification of sequences in the CL, TL, CR and TR libraries

From: The miRNAome of ramie (Boehmeria nivea L.): identification, expression, and potential roles of novel microRNAs in regulation of cadmium stress response

 

CL

TL

CR

TR

reads

Percentage

(%)

reads

Percentage

(%)

reads

Percentage

(%)

reads

Percentage

(%)

rRNA

4,507,417

36.52

rRNA

5,855,373

11,719,819

59.42

9,433,186

62.94

snRNA

2681

0.02

4941

0.04

7509

0.04

7048

0.05

snoRNA

61

0.00

143

0.00

620

0.00

427

0.00

tRNA

417,223

3.38

390,019

2.78

1,052,324

5.33

802,179

5.35

Repbase

6242

0.05

14,359

0.10

9231

0.05

8967

0.06

Unannotated

7,408,536

60.03

7,759,351

55.33

6,935,759

35.16

4,735,246

31.60

Total

12,342,160

100.00

14,024,186

100.00

19,725,262

100.00

14,987,053

100.00

  1. CL, Cd-free leaf (control); TL, Cd-treated leaf; CR, Cd-free root (control); TR, Cd-treated root. rRNA, ribosomal RNA; snRNA, intranuclear small RNA; snoRNA, nucleolar small RNA; tRNA, transport RNA; Repbase, repetitive sequence