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Table 2 Numbers of cytosine and methylation rates in the promoter regions of two genes in haploid, diploid, and triploid seedling

From: Effects of ploidy variation on promoter DNA methylation and gene expression in rice (Oryza sativa L.)

Gene name

Material

CG

CHG

CHH

C total

Sequence length

Methylation level

C Total

11

9

35

55

369 bp

 

LOC_Os01g59320 m-C number

N

10 (90.91%)

5 (55.56%)

15 (42.86%)

30

369 bp

54.55%

2 N

11 (100%)

3 (33.33%)

19 (54.29%)

33

369 bp

60%

3 N

11 (100%)

5 (55.56%)

11 (31.43%)

27

369 bp

49.09%

C Total

49

120

317

486

2000 bp

 

LOC_ Os07g31450 m-C number

N

34 (69.39%)

8 (6.67%)

29 (9.15%)

71

2000 bp

14.61%

2 N

34 (69.39%)

12 (10%)

31 (9.78%)

77

2000 bp

15.84%

3 N

34 (69.39%)

9 (7.5%)

30 (9.46%)

73

2000 bp

15.02%