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Table 1 Characteristics of subfamily II GH3s in G. hirsutum (NAU-NBI, v1.1)

From: Genome-wide analysis of cotton GH3 subfamily II reveals functional divergence in fiber development, hormone response and plant architecture

Gene name

Locus_ID

Arabidopsis orthologs

ORF

Introns

Chr.

Position

 

Deduced polypeptide

Start

End

Strand

Length (aa)

MW (Da)

pI

Gh_AGH3.1

Gh_A03G1628

AtGH3.1

1797

2

A03

97,446,817

97,448,799

–

 

598

67,902.66

6.59

Gh_DGH3.1

Gh_D02G2045

AtGH3.1

1797

2

D02

64,687,129

64,689,111

–

 

598

67,882.61

6.59

Gh_AGH3.2

Gh_A12G0181

AtGH3.1

1794

2

A12

2,676,124

2,678,101

–

 

597

67,886.41

6.02

Gh_DGH3.2

Gh_D12G0182

AtGH3.1

1797

2

D12

2,358,751

2,360,733

–

 

598

67,901.46

6.02

Gh_AGH3.3

Gh_A13G0392

AtGH3.1

1809

2

A13

5,213,724

5,216,267

+

 

602

68,094.70

5.55

Gh_DGH3.3

Gh_D13G0434

AtGH3.1

1809

2

D13

4,919,812

4,922,365

+

 

602

68,036.63

5.59

Gh_AGH3.4

Gh_A11G0443

AtGH3.1

1779

2

A11

4,184,163

4,186,123

+

 

592

67,383.32

5.58

Gh_DGH3.4

Gh_D11G0514

AtGH3.1

1779

2

D11

4,476,391

4,478,353

+

 

592

67,370.40

5.83

Gh_AGH3.5

Gh_A11G1993

AtGH3.1

1821

2

A11

56,447,917

56,449,936

–

 

606

68,573.57

5.60

Gh_DGH3.5

Gh_D11G1989

AtGH3.1

1821

2

D11

26,018,863

26,020,882

+

 

606

68,492.53

5.53

Gh_AGH3.6

Gh_A01G0546

AtGH3.5/3.6

1842

2

A01

9,238,374

9,240,450

+

 

613

69,496.44

5.91

Gh_DGH3.6

Gh_D01G0557

AtGH3.5/3.6

1842

2

D01

7,266,590

7,268,663

+

 

613

69,476.51

5.87

Gh_AGH3.7

Gh_A01G0547

AtGH3.5/3.6

1842

2

A01

9,407,662

9,409,824

+

 

613

69,261.22

6.08

Gh_DGH3.7

Gh_D01G0559

AtGH3.5/3.6

1842

2

D01

7,427,672

7,429,831

+

 

613

69,183.12

6.08

Gh_AGH3.8

Gh_A03G1429

AtGH3.5/3.6

1848

2

A03

94,060,935

94,062,983

+

 

615

69,133.16

5.51

Gh_AGH3.9

Gh_A11G1054

AtGH3.9

1788

3

A11

12,002,212

12,005,380

+

 

595

67,035.10

5.58

Gh_DGH3.9

Gh_D11G1209

AtGH3.9

1788

3

D11

11,289,480

11,292,643

+

 

595

66,823.59

5.41

Gh_AGH3.17

Gh_A03G1354

AtGH3.17

1935

4

A03

92,377,252

92,379,703

–

 

644

73,210.99

6.18

Gh_DGH3.17

Gh_D02G1794

AtGH3.17

1935

4

D02

60,662,189

60,664,648

–

 

644

73,258.06

6.81

Gh_AGH3.18

Gh_A04G0874

AtGH3.17

1629

4

A04

56,316,128

56,318,166

–

 

542

61,206.77

5.97

  1. Characteristics of GH3s in latest genomes of G. hirsutum (DOE-JGI, v3.1) is shown in Additional file 4 Table S3
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BMC Plant Biology

ISSN: 1471-2229

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