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Table 1 Characteristics of subfamily II GH3s in G. hirsutum (NAU-NBI, v1.1)

From: Genome-wide analysis of cotton GH3 subfamily II reveals functional divergence in fiber development, hormone response and plant architecture

Gene name Locus_ID Arabidopsis orthologs ORF Introns Chr. Position   Deduced polypeptide
Start End Strand Length (aa) MW (Da) pI
Gh_AGH3.1 Gh_A03G1628 AtGH3.1 1797 2 A03 97,446,817 97,448,799   598 67,902.66 6.59
Gh_DGH3.1 Gh_D02G2045 AtGH3.1 1797 2 D02 64,687,129 64,689,111   598 67,882.61 6.59
Gh_AGH3.2 Gh_A12G0181 AtGH3.1 1794 2 A12 2,676,124 2,678,101   597 67,886.41 6.02
Gh_DGH3.2 Gh_D12G0182 AtGH3.1 1797 2 D12 2,358,751 2,360,733   598 67,901.46 6.02
Gh_AGH3.3 Gh_A13G0392 AtGH3.1 1809 2 A13 5,213,724 5,216,267 +   602 68,094.70 5.55
Gh_DGH3.3 Gh_D13G0434 AtGH3.1 1809 2 D13 4,919,812 4,922,365 +   602 68,036.63 5.59
Gh_AGH3.4 Gh_A11G0443 AtGH3.1 1779 2 A11 4,184,163 4,186,123 +   592 67,383.32 5.58
Gh_DGH3.4 Gh_D11G0514 AtGH3.1 1779 2 D11 4,476,391 4,478,353 +   592 67,370.40 5.83
Gh_AGH3.5 Gh_A11G1993 AtGH3.1 1821 2 A11 56,447,917 56,449,936   606 68,573.57 5.60
Gh_DGH3.5 Gh_D11G1989 AtGH3.1 1821 2 D11 26,018,863 26,020,882 +   606 68,492.53 5.53
Gh_AGH3.6 Gh_A01G0546 AtGH3.5/3.6 1842 2 A01 9,238,374 9,240,450 +   613 69,496.44 5.91
Gh_DGH3.6 Gh_D01G0557 AtGH3.5/3.6 1842 2 D01 7,266,590 7,268,663 +   613 69,476.51 5.87
Gh_AGH3.7 Gh_A01G0547 AtGH3.5/3.6 1842 2 A01 9,407,662 9,409,824 +   613 69,261.22 6.08
Gh_DGH3.7 Gh_D01G0559 AtGH3.5/3.6 1842 2 D01 7,427,672 7,429,831 +   613 69,183.12 6.08
Gh_AGH3.8 Gh_A03G1429 AtGH3.5/3.6 1848 2 A03 94,060,935 94,062,983 +   615 69,133.16 5.51
Gh_AGH3.9 Gh_A11G1054 AtGH3.9 1788 3 A11 12,002,212 12,005,380 +   595 67,035.10 5.58
Gh_DGH3.9 Gh_D11G1209 AtGH3.9 1788 3 D11 11,289,480 11,292,643 +   595 66,823.59 5.41
Gh_AGH3.17 Gh_A03G1354 AtGH3.17 1935 4 A03 92,377,252 92,379,703   644 73,210.99 6.18
Gh_DGH3.17 Gh_D02G1794 AtGH3.17 1935 4 D02 60,662,189 60,664,648   644 73,258.06 6.81
Gh_AGH3.18 Gh_A04G0874 AtGH3.17 1629 4 A04 56,316,128 56,318,166   542 61,206.77 5.97
  1. Characteristics of GH3s in latest genomes of G. hirsutum (DOE-JGI, v3.1) is shown in Additional file 4 Table S3