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Table 1 RNA-Seq read count information

From: Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification

Samplea

Raw Input Reads

Clean Reads

% Clean Reads

Mapped Reads

% Mapped Readsb

Multiple Alignment Reads

%Multiple Alignment Readsb

WTNS R1

24,019,397

23,961,896

99.76

22,973,989

95.88

1,952,214

8.15

WTNS R2

22,859,782

22,779,097

99.65

21,709,287

95.30

2,029,217

8.91

WTS R1

23,050,208

22,990,113

99.74

21,979,140

95.60

1,746,186

7.60

WTS R2

23,437,864

23,362,805

99.68

22,119,198

94.68

2,102,270

9.00

L1NS R1

23,259,980

23,234,303

99.89

22,207,203

95.58

2,048,681

8.82

L1NS R2

23,944,162

23,859,454

99.65

22,673,161

95.03

2,110,311

8.84

L1S R1

22,358,313

22,282,400

99.66

21,248,337

95.36

2,332,891

10.47

L1S R2

22,980,550

22,928,854

99.78

21,527,676

93.89

1,739,326

7.59

  1. a R1 and R2 indicate biological replicates
  2. bThe % mapped reads and % multiple alignment reads were calculated using the clean reads as a denominator