Table 5 Genomic intervals containing the identified QTLs for each trait and number of annotated genes in each interval
From: QTL mapping of melon fruit quality traits using a high-density GBS-based genetic map
Trait | Gene/QTL ID | QTL interval (cM) | QTL interval (pb) | Number of annotated genesa |
|---|---|---|---|---|
SSC | SSCQU8.1 | 5.64 | 7,840,956 | 389 |
SSCQU8.2 | 2.23 | 3,935,559 | 195 | |
SSCQU8.3 | 8.55 | 2,469,490 | 123 | |
SSCQU9.1 | 12.68 | 3,735,902 | 290 | |
SSCQU9.2 | 7.36 | 8,325,555 | 525 | |
SSCQU10.1 | 19.75 | 1,445,582 | 231 | |
FW | FWQU5.1 | 6.28 | 495,756 | 48 |
FWQU8.1 | 12.76 | 1,604,232 | 220 | |
FD | FDQU2.1 | 19.51 | 7,397,024 | 501 |
FDQU5.1 | 6.28 | 495,756 | 48 | |
FS | FSQU2.1 | 22.77 | 1,257,435 | 136 |
FSQU2.2 | 6.55 | 310,997 | 34 | |
FSQU6.1 | 6.98 | 11,175,401 | 545 | |
FSQU6.2 | 9.34 | 4,784,510 | 432 | |
FSQU11.1 | 16.77 | 1,770,390 | 221 | |
FL | FLQU5.1 | 10.10 | 731,750 | 82 |
FLQU6.1 | 8.11 | 10,576,960 | 505 | |
FLQU11.1 | 19.96 | 892,764 | 108 | |
FLQU11.2 | 16.99 | 1,794,042 | 224 | |
FP | FPQU5.1 | 6.28 | 495,756 | 48 |
FPQU6.1 | 29.43 | 25,000,330a | 1444 | |
FPQU7.1 | 16.80 | 999,749 | 149 | |
FPQU11.1 | 19.96 | 892,764 | 108 | |
YELL | YELLQU5.1 | 1.11 | 295,191 | 54 |
YELLQU10.1 (CmKFB) | 15.61 | 992,569 | 156 | |
YELLQU12.1 | 7.00 | 599,018 | 65 | |
MOT | Mt-2 | – | 858,294 | 139 |
ECOL | ECOLQU3.1 | 7.37 | 1,476,065 | 238 |
Wi | – | 308,385 + 271,774b | 41 + 19 | |
CAR | CARQU9.1 (CmOr) | 2.77 | 366,884 | 47 |
SN | SNQU5.1 | 12.92 | 629,802 | 76 |
SW | SWQU3.1 | 2.99 | 423,645 | 73 |
SWQU5.1 | 12.96 | 663,117 | 85 | |
SWQU7.1 | 4.48 | 513,375 | 90 | |
SWQU8.1 | 11.92 | 635,283 | 94 | |
Median | 9.42 | 942,667 | 130 | |