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Table 4 QTL analysis for the traits evaluated. QTLs with LOD > 2.5 using the mean of five blocks (maximum LOD in each block T1-T5 is also annotated)

From: QTL mapping of melon fruit quality traits using a high-density GBS-based genetic map

Trait

QTL ID

LOD

R2

Additive effecta

Chr

Genetic position (cM)

Physical positionb (pb)

Flanking marker 1 respect 1-LOD CI

Flanking marker 2 respect to 1-LOD CI

LOD T1c

LOD T2c

LOD T3c

LOD T4c

LOD T5c

SSC

SSCQU8.1

9.96

40.3

−1.26

8

86.49

9,634,968

chr08_9446475

chr08_17287431

6.3

8.0

2.7

5.8

4.4

SSCQU8.2

9.83

39.9

−1.27

8

90.28

2,446,682

chr08_21787907

chr08_25723466

5.7

8.9

3.0

5.9

4.7

SSCQU8.3

10.76

42.7

−1.3

8

102.66

29,813,774

chr08_29419309

chr08_31888799

8.2

6.2

3.8

6.9

5.9

SSCQU9.1

2.78

13.4

0.711

9

33.49

3,446,851

chr09_2403873

chr09_6139775

1.6

4.1

1.4

2.7

2.5

SSCQU9.2

2.57

12.5

0.69

9

49.89

18,822,601

chr09_12354052

chr09_20679607

0.8

4.6

1.5

2.5

2.7

SSCQU10.1

3.3

15.7

0.77

10

18.06

1,448,864

chr10_290494

chr10_1736076

1.5

2.8

1.5

2.6

2.6

FW

FWQU5.1

6.42

28.3

153.27

5

40.51

2,516,188

chr05_2356255

chr05_2852011

6.7

2.1

2.3

3.0

2.2

FWQU8.1

2.51

12.2

−92.38

8

31.73

3,794,839

chr08_2692759

chr08_4296991

0.8

0.3

1.7

2.5

2.8

FD

FDQU2.1

3.29

15.6

0.47

2

88.58

19,149,034

chr02_16082886

chr02_23479910

1.4

1.4

1.7

3.2

2.4

FDQU5.1

4.92

22.5

0.6

5

41.22

2,516,188

chr05_2356255

chr05_2852011

5.5

1.8

2.3

2.0

1.5

FS

FSQU2.1

2.96

14.2

−0.061

2

30.07

2,291,502

chr02_1078625

chr02_2336060

2.6

3.0

2.4

3.6

0.1

FSQU2.2

3.18

15.2

−0.064

2

75.52

15,813,424

chr02_15771889

chr02_16082886

4.5

2.0

0.3

1.5

1.4

FSQU6.1

7.7

32.9

−0.092

6

99.72

27,462,954

chr06_20798398

chr06_31973799

4.1

4.9

6.9

2.5

5.7

FSQU6.2

6.96

30.2

−0.087

6

106.99

37,606,100

chr06_31628322

chr06_36412832

4.3

5.0

5.6

2.9

3.4

FSQU11.1

3.34

15.9

−0.064

11b

81.68

31,585,050

chr11_30961509

chr11_32731899

2.1

2.8

4.8

2.1

1.1

FL

FLQU5.1

5.29

24

1.16

5

40.51

2,516,188

chr05_2120261

chr05_2852011

5.1

2.3

2.0

3.8

2.9

FLQU6.1

5.78

25.9

−1.1

6

100.43

27,462,951

chr06_21051362

chr06_31628322

3.2

4.5

3.8

2.5

4.6

FLQU11.1

3.79

17.8

−0.96

11b

47.46

29,855,362

chr11_29106564

chr11_29999328

3.7

2.5

1.7

3.1

1.8

FLQU11.2

2.67

12.9

−0.81

11b

80.68

31,585,050

chr11_30961509

chr11_32755551

4.7

2.8

4.4

0.6

0.2

FP

FPQU5.1

6.73

29.4

2.95

5

40.51

2,516,188

chr05_2356255

chr05_2852011

7.7

2.8

2.6

3.2

2.5

FPQU6.1

2.75

13.3

−1.81

6

100.43

27,462,951

chr06_11412502

chr06_36412832

1.5

3.2

1.6

1.7

2.0

FPQU7.1

2.54

12.3

−1.83

7

29.47

2,201,369

chr07_1702059

chr07_2701808

1.0

1.8

1.1

2.4

1.7

FPQU11.1

3.27

15.6

−2.03

11b

42.79

29,394,480

chr11_29106564

chr11_29999328

3.5

2.7

1.1

3.0

1.1

YELL

YELLQU5.1

3.15

15.1

−0.15

5

125.12

29,117,405

chr05_28951742

chr05_29246933

3.8

2.8

1.4

2.5

1.9

YELLQU10.1

8.79

36.6

−0.25

10

34.07

3,356,770

chr10_3152004

chr10_4144573

8.1

5.9

4.2

6.6

6.7

YELLQU12.1

2.96

14.2

0.15

12

11.21

1,137,460

chr12_748772

chr12_1347790

1.7

1.6

1.4

2.8

2.4

ECOL

ECOLQU3.1

3.49

16.5

0.21

3

113.40

29,722,370

chr03_29257789

chr03_30733854

3.5 d

3.0 d

CAR

CARQU9.1

16.82

58.5

5.6

9

64.32

21,685,526

chr09_21387823

chr09_21754707

12.7

11.6

13.6

SN

SNQU5.1

2.73

13.2

33.43

5

14.46

1,225,236

chr05_729528

chr05_1359330

2.1

0.5

0.3

2.1

0.4

SW

SWQU3.1

4.11

19.2

2.7

3

122.11

31,385,347

chr03_30962715

chr03_31386360

2.4

1.6

0.3

2.7

1.7

SWQU5.1

4.3

19.9

2.9

5

87.63

24,945,625

chr05_24663285

chr05_25326402

3.0

2.6

3.2

2.4

1.2

SWQU7.1

2.91

14.0

−2.2

7

0.78

349,611

chr07_141549

chr07_654924

0.9

1.4

1.5

0.9

2.0

SWQU8.1

4.29

19.9

−2.7

8

43.35

4,989,794

chr08_4672912

chr08_5308195

0.9

6.9

1.9

3.1

1.2

  1. aAdditive effect of the Ved allele
  2. bPhysical position is relative to the melon genome sequence v3.6.1
  3. cBold and underlined font for LOD scores above 3, underlined font for LOD scores between 2.5–3
  4. dLOD scores for 2015 and 2016, respectively