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Fig. 9 | BMC Plant Biology

Fig. 9

From: Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions

Fig. 9

a Alignment of TAS3 transcripts from Arabidopsis thaliana AtTAS3b, Nicotiana tabacum NtTAS3a (1) and NtTAS3a (2), Solanum tuberosum StTAS3 and Solanum lycopersicum SlTAS3. miR390 target sites (5′ and 3′) on all TAS3 transcripts are highlighted with red boxes. b Magnified view of the alignment of TAS3 transcripts from above mentioned plant species. StTAS3-siR1, with an abundance value of 134 and StTAS3-siR2, with an abundance value of 148, showed a close conservation across chosen plant species. c psRNATarget prediction shows that StTAS3-siR1 cleaves Auxin Response Factor StARF3, whereas StTAS3-siR2 cleaves StARF2 with a cleavage expectancy of E = 0.5 and E = 1.0, respectively. Accessions: StARF3, PGSC0003DMT400081282; StARF2, PGSC0003DMT400036765. d Alignment of Solanum tuberosum StTAS5 transcript with that of Solanum lycopersicum SlTAS5 transcript. miR482c/miR482a-3p target site is highlighted in red box. e Magnified view of TAS5 transcripts alignment from potato and tomato. StTAS5-siRNA (−), with an abundance value of 1734, showed a high conservation with tomato SlTAS5–3′ D12(−)

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