Table 1 SLAF-seq data summary
Female parent | Male parent | Offspring | Total | |
|---|---|---|---|---|
Total reads | ||||
No. of reads | 40,766,678 | 30,306,654 | 12,082,377 | 2016.336(M) |
Q30 Percentage(%) | 88.32 | 89.98 | 90.61 | 90.59 |
GC Percentage(%) | 36.53 | 36.41 | 36.22 | 36.22 |
Initial SLAFs | ||||
No. of SLAFs | 303,472 | 337,850 | 312,008 | 524,662 |
Total SLAF depth | 8,645,341 | 8,508,609 | 3,468,234 | |
Average SLAF depth | 28.49 | 25.18 | 11.12 | |
SLAF markers on the map | ||||
No. of SLAF markers | 6156 | 6156 | 6126 | |
Total Depth | 347,532 | 391,400 | 187,855 | |
Average Depth | 56.45 | 63.58 | 30.67 | |