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Table 1 Genetic diversity of the four Palestinian snake melon landraces using the DArTseq and SNP data sets

From: Characterizing Palestinian snake melon (Cucumis melo var. flexuosus) germplasm diversity and structure using SNP and DArTseq markers

  Number of markers Average PIC Average Call rate (%) Reproducibility (%) Landrace Na Ne I He P (%)
DArTseq markers 7400 0.192 92.48 99.4 GB 2.14 1.49 0.45 0.27 77.2
GS 1.98 1.45 0.40 0.24 68.5
WB 2.17 1.48 0.44 0.26 77.0
WS 2.04 1.42 0.39 0.23 69.3
SNP Markers 9750 0.234 95.24 98.2 GB 1.81 1.48 0.42 0.28 81.4
GS 1.75 1.43 0.38 0.25 75.3
WB 1.85 1.50 0.43 0.29 84.7
WS 1.81 1.45 0.40 0.26 80.7
  1. Abbreviations: Na Number of different alleles, Ne Number of effective alleles, I Shannon’s diversity index, He Expected heterozygosity, P Polymorphic loci