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Table 4 List of up-regulated contigs in wheat roots with high sequence similarity to genes involved in methionine metabolic process

From: Activation of a gene network in durum wheat roots exposed to cadmium

Contig ID Creso roots FC Svevo roots FC TAIR AGI CODE TAIR Annotation
CTRL +Cd CTRL +Cd
contig2986 230.7 717.3 3.1 256.7 648.1 2.5 AT4G14716 Acireductone dioxygenase 1 (ARD1)
contig930 260.6 895.9 3.4 265.2 878.6 3.3 AT4G14716
contig39444 2.0 15.0 7.6 3.4 8.0 2.3 AT1G50110 Branched-Chain Aminotransferase 6 (BCAT6)
contig13983 4.0 40.5 10.2 4.9 14.1 2.9 AT3G25900 Homocysteine S-methyltransferase (HMT-1)
contig25432 1.6 18.0 11.2 1.6 10.5 6.7 AT1G80360 Methionine aminotransferase (ISS1)
contig10788 13.9 62.8 4.5 15.4 44.3 2.9 AT2G05830 5-methylthioribose kinase 1 (MTI1)
contig10789 25.4 61.0 2.4 23.8 53.0 2.2 AT2G05830
contig32510 3.9 23.0 5.8 3.2 10.3 3.3 AT1G49820 S-methyl-5-thioribose kinase (MTK)
contig5064 26.8 106.2 4.0 26.3 64.2 2.4 AT1G49820
contig80693 1.9 7.1 3.8 0.9 17.6 19.4 AT1G49820
contig11517 53.5 139.1 2.6 54.4 161.3 3.0 AT4G34840 Methylthioadenosine nucleosidase 2 (MTN2)
contig11518 37.2 108.5 2.9 33.9 101.6 3.0 AT4G34840
contig14879 2.6 8.0 3.1 4.7 11.6 2.5 AT3G53260 Phenylalanine ammonia-lyase 2 (PAL2)
contig104004 2.3 12.7 5.6 1.1 5.5 5.0 AT5G53970 Tyrosine transaminase 1 (TAT1)
contig16069 30.5 102.5 3.4 16.9 49.8 2.9 AT5G53970
contig20039 32.8 481.2 14.7 8.1 272.7 33.8 AT5G53970
contig3346 14.6 60.0 4.1 10.0 30.5 3.1 AT5G53970
contig7573 10.4 209.0 20.1 2.2 121.7 56.5 AT5G53970
contig33842 4.1 11.4 2.8 3.1 7.1 2.3 AT5G36160 Tyrosine transaminase 2 (TAT2)
contig1980 64.6 129.0 2.0 61.8 125.9 2.0 AT5G53850 dehydratase / enolase / phosphatase (DEP)