Skip to main content

Table 2 List of up-regulated contigs in Creso and Svevo wheat roots with high sequence similarity to transcription factors

From: Activation of a gene network in durum wheat roots exposed to cadmium

Contig ID

Creso roots

FC

Svevo roots

FC

TAIR AGI CODE

TAIR Annotation

CTRL

+Cd

CTRL

+Cd

contig33526

1.7

2.8

1.7

2.8

5.7

2.0

AT1G27730

salt tolerance zinc finger (ZAT10)

contig41708

5.7

13.5

2.3

8.3

19.9

2.4

AT1G27730

contig57171

4.1

9.1

2.2

7.1

20.2

2.8

AT1G27730

contig72518

0.9

2.0

2.3

1.5

6.8

4.4

AT1G27730

contig12928

16.3

40.6

2.5

13.1

41.1

3.1

AT2G28160

basic helix-loop-helix (bHLH) DNA-binding (bHLH29/FIT)

contig50497

9.1

15.6

1.7

6.9

21.3

3.1

AT2G28160

contig69766

6.1

12.6

2.1

5.6

15.6

2.8

AT2G28160

contig33459

6.3

15.3

2.4

8.1

25.1

3.1

AT2G38470

WRKY DNA-binding protein 33 (WRKY33)

contig42013

6.7

16.9

2.5

10.2

30.0

2.9

AT2G38470

contig50500

4.6

10.2

2.2

5.9

13.4

2.3

AT2G38470

contig54713

1.4

1.7

1.3

1.4

16.5

11.5

AT2G38470

contig64297

3.2

9.3

2.9

6.1

13.1

2.1

AT3G20310

ethylene response factor 7 (ERF7)

contig81176

1.1

3.5

3.3

2.2

10.0

4.5

AT3G20310

contig25001

4.6

16.3

3.5

5.5

11.1

2.0

AT3G47640

basic helix-loop-helix (bHLH) DNA-binding (bHLH47/PYE)

contig49051

0.7

1.4

2.1

1.6

7.0

4.4

AT3G47640

contig119028

0.9

7.8

8.9

0.7

4.7

6.6

AT3G56970

basic helix-loop-helix (bHLH) DNA-binding (bHLH38/ORG2)

contig59732

4.7

16.0

3.4

4.6

15.5

3.4

AT3G56970

contig45646

3.6

8.1

2.2

5.3

12.0

2.3

AT4G23810

WRKY DNA-binding protein 53 (WRKY53)

contig25913

4.8

11.9

2.5

7.6

17.4

2.3

AT5G24110

WRKY DNA-binding protein 30 (WRKY30)

contig64256

3.5

8.9

2.5

5.2

11.2

2.2

AT5G24110

contig67994

2.0

6.8

3.4

5.0

10.8

2.2

AT5G24110

contig74889

1.7

3.6

2.1

2.7

5.1

1.9

AT5G24110