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Table 1 List of up-regulated contigs in Creso and Svevo wheat roots with high sequence similarity to membrane transporters of heavy metals

From: Activation of a gene network in durum wheat roots exposed to cadmium

Contig ID Creso roots FC Svevo roots FC TAIR AGI CODE TAIR Annotation
CTRL +Cd CTRL +Cd
contig45935 5.2 13.7 2.6 3.9 8.7 2.3 AT1G10970 zinc transporter 4 precursor (ZIP4)
contig48191 2.2 6.6 3.0 2.0 5.1 2.6 AT1G10970
contig73320 1.5 5.9 3.9 1.1 8.7 7.9 AT1G10970
contig16227 7.2 29.5 4.1 6.3 13.9 2.2 AT1G47240 NRAMP metal ion transporter 2 (NRAMP2)
contig30944 2.6 15.0 5.8 2.4 7.2 3.0 AT1G51340 MATE efflux family protein (MATE)
contig13545 18.2 42.7 2.3 12.9 40.5 3.1 AT1G63440 heavy metal atpase 5 (HMA5)
contig17301 5.8 15.1 2.6 5.2 11.6 2.2 AT1G63440
contig20319 13.9 47.7 3.4 9.8 44.8 4.6 AT1G63440
contig40560 17.1 47.9 2.8 14.4 37.5 2.6 AT1G63440
contig5883 14.1 33.8 2.4 12.0 24.5 2.0 AT1G63440
contig59715 1.3 10.2 7.7 2.0 24.5 12.1 AT1G76800 vacuolar iron transporter (VIT)
contig6853 5.3 33.9 6.4 7.5 47.0 6.2 AT1G76800
contig25958 7.0 25.1 3.6 5.7 12.6 2.2 AT3G20870 ZIP metal ion transporter family (ZTP29)
contig61554 24.7 111.8 4.5 17.1 80.3 4.7 AT3G20870
contig6172 11.8 48.7 4.1 8.4 26.0 3.1 AT3G20870
contig36800 2.0 70.0 35.5 1.3 28.3 22.5 AT3G43790 zinc induced facilitator-like 2 (ZIFL2)
contig38345 11.4 124.9 10.9 6.4 49.2 7.6 AT3G43790
contig54958 3.3 40.8 12.5 1.8 16.5 9.0 AT3G43790
contig143856 5.1 23.5 4.6 2.8 6.8 2.4 AT4G24120 yellow stripe like 1 (YSL1)
contig36593 2.4 13.4 5.6 2.5 14.1 5.8 AT5G03570 iron regulated 2 (IREG2)
contig47439 5.7 57.4 10.1 3.0 40.8 13.5 AT5G03570
contig155 3.1 121.9 39.4 1.0 34.5 33.0 AT5G13740 zinc induced facilitator 1 (ZIF1)
contig15565 3.1 30.1 9.8 2.1 10.8 5.1 AT5G13750 zinc induced facilitator-like 1 (ZIFL1)
contig75088 9.0 166.7 18.5 3.3 77.3 23.3 AT5G13750
contig81708 1.3 14.4 10.9 1.3 5.2 4.0 AT5G13750
contig31191 5.3 10.7 2.0 4.3 12.9 3.0 AT5G20650 copper transporter 5 (COPT5)
contig64300 3.2 16.6 5.1 2.7 5.5 2.0 AT5G23760 copper transport protein family (HPP7)
contig25370 29.7 113.5 3.8 26.3 65.5 2.5 AT5G24380 yellow stripe like 2 (YSL2)
contig26249 17.6 80.0 4.5 7.7 42.6 5.5 AT5G39040 ABC transporter B type member 27 (ABCB27)
  1. In “CTRL” and “+Cd” columns the expression values (FPKM) are reported. In “FC” columns the relative fold changes are reported. The last two columns report the AGI code and the annotation of the most similar Arabidopsis gene to the wheat contig