Skip to main content

Table 1 List of up-regulated contigs in Creso and Svevo wheat roots with high sequence similarity to membrane transporters of heavy metals

From: Activation of a gene network in durum wheat roots exposed to cadmium

Contig ID

Creso roots

FC

Svevo roots

FC

TAIR AGI CODE

TAIR Annotation

CTRL

+Cd

CTRL

+Cd

contig45935

5.2

13.7

2.6

3.9

8.7

2.3

AT1G10970

zinc transporter 4 precursor (ZIP4)

contig48191

2.2

6.6

3.0

2.0

5.1

2.6

AT1G10970

contig73320

1.5

5.9

3.9

1.1

8.7

7.9

AT1G10970

contig16227

7.2

29.5

4.1

6.3

13.9

2.2

AT1G47240

NRAMP metal ion transporter 2 (NRAMP2)

contig30944

2.6

15.0

5.8

2.4

7.2

3.0

AT1G51340

MATE efflux family protein (MATE)

contig13545

18.2

42.7

2.3

12.9

40.5

3.1

AT1G63440

heavy metal atpase 5 (HMA5)

contig17301

5.8

15.1

2.6

5.2

11.6

2.2

AT1G63440

contig20319

13.9

47.7

3.4

9.8

44.8

4.6

AT1G63440

contig40560

17.1

47.9

2.8

14.4

37.5

2.6

AT1G63440

contig5883

14.1

33.8

2.4

12.0

24.5

2.0

AT1G63440

contig59715

1.3

10.2

7.7

2.0

24.5

12.1

AT1G76800

vacuolar iron transporter (VIT)

contig6853

5.3

33.9

6.4

7.5

47.0

6.2

AT1G76800

contig25958

7.0

25.1

3.6

5.7

12.6

2.2

AT3G20870

ZIP metal ion transporter family (ZTP29)

contig61554

24.7

111.8

4.5

17.1

80.3

4.7

AT3G20870

contig6172

11.8

48.7

4.1

8.4

26.0

3.1

AT3G20870

contig36800

2.0

70.0

35.5

1.3

28.3

22.5

AT3G43790

zinc induced facilitator-like 2 (ZIFL2)

contig38345

11.4

124.9

10.9

6.4

49.2

7.6

AT3G43790

contig54958

3.3

40.8

12.5

1.8

16.5

9.0

AT3G43790

contig143856

5.1

23.5

4.6

2.8

6.8

2.4

AT4G24120

yellow stripe like 1 (YSL1)

contig36593

2.4

13.4

5.6

2.5

14.1

5.8

AT5G03570

iron regulated 2 (IREG2)

contig47439

5.7

57.4

10.1

3.0

40.8

13.5

AT5G03570

contig155

3.1

121.9

39.4

1.0

34.5

33.0

AT5G13740

zinc induced facilitator 1 (ZIF1)

contig15565

3.1

30.1

9.8

2.1

10.8

5.1

AT5G13750

zinc induced facilitator-like 1 (ZIFL1)

contig75088

9.0

166.7

18.5

3.3

77.3

23.3

AT5G13750

contig81708

1.3

14.4

10.9

1.3

5.2

4.0

AT5G13750

contig31191

5.3

10.7

2.0

4.3

12.9

3.0

AT5G20650

copper transporter 5 (COPT5)

contig64300

3.2

16.6

5.1

2.7

5.5

2.0

AT5G23760

copper transport protein family (HPP7)

contig25370

29.7

113.5

3.8

26.3

65.5

2.5

AT5G24380

yellow stripe like 2 (YSL2)

contig26249

17.6

80.0

4.5

7.7

42.6

5.5

AT5G39040

ABC transporter B type member 27 (ABCB27)

  1. In “CTRL” and “+Cd” columns the expression values (FPKM) are reported. In “FC” columns the relative fold changes are reported. The last two columns report the AGI code and the annotation of the most similar Arabidopsis gene to the wheat contig