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Table 2 Selected genes differentially expressed between RHT-B1b and RHT-B1bE529K

From: Phenotypic and transcriptomic characterization of a wheat tall mutant carrying an induced mutation in the C-terminal PFYRE motif of RHT-B1b

Gene ID Description (No. of homeologs/paralogs) a Ave. norm. count b FC
WT MT
Coleoptile
 TraesCS5A01G363200 Fatty acyl-CoA reductase (2) 67 856 12.8
 TraesCS2B01G047200 Hfr-2-like protein 70 347 5.0
 TraesCS7B01G171400 Methionine aminopeptidase 19 2 -9.7
 TraesCS4A01G415400 LOB domain-containing protein, putative 61 2 -30.0
First leaf
 TraesCS2B01G043600 NBS-LRR-like resistance protein (2) 21 115 5.4
 TraesCS7A01G463900 Disease resistance protein RPM1 45 188 4.1
 TraesCS2B01G569100 Heavy metal transport/detoxification superfamily protein (2) 16 74 4.6
 TraesCS2A01G574800 Receptor kinase-like protein (3) 2 26 11.2
 TraesCS7A01G012100 Leucine-rich repeat receptor-like protein kinase family protein 2 20 8.9
 TraesCS4B01G092200 Protein kinase family protein (2) 24 107 4.5
 TraesCS3A01G438800 Dual specificity mitogen-activated protein kinase kinase 4 110 330 3.0
 TraesCS7A01G419700 UDP-glycosyltransferase 95 12 -7.7
 TraesCS2B01G091200 IAA-amino acid hydrolase ILR1 10 1 -13.4
Z49 peduncle
 TraesCS6A01G380000 Phosphate transporter PHO1-like protein 53 117 2.2
 TraesCS7A01G088700 Sulfate transporter 115 224 1.9
 TraesCS3A01G388000 Amino acid permease (2) 46 108 2.3
 TraesCS1A01G142400 Na(+)/H(+) antiporter NhaB 303 443 1.5
 TraesCS1A01G029800 RING/U-box superfamily protein (3) 167 251 1.5
 TraesCS7A01G024600 RING finger protein 171 285 1.7
 TraesCS2A01G205400 U-box domain-containing protein 465 764 1.6
 TraesCS1B01G184500 Carboxypeptidase 133 256 1.9
 TraesCS5A01G272400 Chitinase-like protein (2) 582 856 1.5
 TraesCS3B01G308000 Carotenoid cleavage dioxygenase 577 1041 1.8
 TraesCS3B01G773500LC Arabinogalactan peptide 3 712 1567 2.2
 TraesCS3B01G347300 Arabinogalactan peptide 14 (3) 62 140 2.3
 TraesCS1A01G396700 Fasciclin-like arabinogalactan protein 353 513 1.5
 TraesCS3B01G401000 Auxin influx transporter 1972 2851 1.4
 TraesCS3A01G121300 Auxin-responsive protein 176 273 1.6
 TraesCS2B01G289800 LOB domain-containing protein (2) 719 1060 1.5
 TraesCS1A01G264000 DNA helicase (5) 5982 4213 -1.4
 TraesCS2A01G103300 ATP-dependent RNA helicase DeaD (3) 366 254 -1.4
 TraesCS4B01G124700LC DNA polymerase 898 622 -1.4
 TraesCS3B01G137500 DNA polymerase epsilon subunit 342 231 -1.5
 TraesCS3A01G117500 DNA mismatch repair protein mutS 242 162 -1.5
 TraesCS7A01G140800 DNA mismatch repair protein MutL 314 216 -1.5
 TraesCS1A01G409600 Topoisomerase 1-associated factor 1 610 428 -1.4
 TraesCS4B01G045000 Homologous-pairing protein 2-like protein 206 132 -1.6
 TraesCS5B01G303500 Sister chromatid cohesion 1 protein 3 194 131 -1.5
 TraesCS1B01G376100 Histone H4 234 158 -1.5
 TraesCS5B01G186000 Histone acetyltransferase type B catalytic subunit 684 480 -1.4
 TraesCS5A01G158800 Histone-lysine N-methyltransferase 238 148 -1.6
 TraesCS7B01G302500 Non-structural maintenance of chromosome element 4 100 53 -1.9
 TraesCS4A01G234600 Cyclin family protein (2) 327 210 -1.6
 TraesCS4A01G250600 GRF1-interacting factor-like protein 302 148 -2.0
Z52 peduncle
 TraesCS3A01G230000 Carbonic anhydrase (3) 7582 13625 1.8
 TraesCS7A01G381100 Fructose-bisphosphate aldolase (2) 1567 2687 1.7
 TraesCS4A01G225100 Sucrose-phosphate synthase 236 556 2.4
 TraesCS2B01G048200 Glyceraldehyde-3-phosphate dehydrogenase 372 575 1.5
 TraesCS7B01G193600 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 234 385 1.6
 TraesCS1B01G084700 Dihydrolipoyl dehydrogenase 593 936 1.6
 TraesCS2A01G396300 Protein SPIRAL1 (2) 47 119 2.5
 TraesCS7A01G405600 Eukaryotic aspartyl protease family protein 39 119 3.0
 TraesCS7A01G111700LC Chitinase 20 52 2.6
 TraesCS7A01G789200LC NBS-LRR disease resistance protein-like protein 30 74 2.5
 TraesCS2B01G066000 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 696 467 -1.5
 TraesCS1A01G266000 Phospholipase A1 201 93 -2.2
 TraesCS1A01G265500 Wound-induced protease inhibitor 38 4 -9.3
  1. aNumber of homeologs or paralogs DEGs with identical gene description is indicated in parenthesis.
  2. bAverage normalized count from DESeq2
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BMC Plant Biology

ISSN: 1471-2229

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