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Table 1 Overview of histone deacetylases genes identified in soybean

From: Characterization and subcellular localization of histone deacetylases and their roles in response to abiotic stresses in soybean

Gene ID DNA attributes Protein attributes
Gene namea Gene locusb Accession numberc Chromosome ORF (bp) No. of exons Length (aa) MW (kDa) PI Localizationd
GmHDA1 Glyma.01 g245100 XP_003517607.1 1 1494 7 497 56.28 5.30 nucl, cyto
GmHDA2 Glyma.04 g000200 XP_003543935.1 4 1494 7 497 55.96 5.04 cyto, nucl
GmHDA3 Glyma.04 g187000 XP_006578653.1 4 1398 6 465 52.18 5.28 cyto, chlo
GmHDA4 Glyma.04 g187100 KRH63610.1 4 594 2 197 22.26 6.31 cyto
GmHDA5 Glyma.05 g012900 KRH56687.1 5 1254 14 417 45.28 7.39 nucl, cyto
GmHDA6 Glyma.05 g021400 XP_003524633.1 5 1971 14 656 73.04 5.25 cyto, nucl
GmHDA7 Glyma.05 g040600 XP_003525556.1 5 1431 6 476 53.30 5.24 nucl
GmHDA8 Glyma.05 g192600 XP_014631275.1 5 1263 9 420 45.54 6.09 chlo, nucl
GmHDA9 Glyma.06 g000100 XP_003526730.1 6 1494 7 497 55.95 5.06 nucl, cyto
GmHDA10 Glyma.06 g178700 KRH54335.1 6 705 1 234 26.74 8.88 chlo, cyto
GmHDA11 Glyma.11 g000300 XP_006590384.1 11 1494 7 497 56.12 5.22 nucl, cyto
GmHDA12 Glyma.11 g187800 XP_003538135.1 11 1290 14 429 48.94 4.98 cyto, nucl
GmHDA13 Glyma.12 g086700 XP_003539814.1 12 1290 14 429 48.94 5.06 cyto, mito
GmHDA14 Glyma.12 g188200 XP_003540263.1 12 1146 3 381 41.18 5.44 cyto, chlo
GmHDA15 Glyma.17 g078000 KRH03123.1 17 1971 14 656 72.99 5.35 cyto, nucl
GmHDA16 Glyma.17 g085700 XP_003549603.1 17 1419 6 472 52.92 5.26 nucl, chlo
GmHDA17 Glyma.17 g120900 XP_006600776.1 17 1632 17 543 59.6 5.91 nucl, cyto
GmHDA18 Glyma.17 g229600 XP_003550277.1 17 1047 13 348 38.50 6.29 cyto, nucl
GmSRT1 Glyma.04 g210000 XP_003522478.1 4 1182 11 393 43.46 9.40 chlo, mito
GmSRT2 Glyma.06 g156000 XP_003528059.2 6 1179 11 392 43.21 9.32 chlo, mito
GmSRT3 Glyma.08 g330200 KHN11152.1 8 1302 13 433 48.09 9.11 chlo, nucl
GmSRT4 Glyma.18g076300 XP_003551434.1 18 1440 14 479 53.19 9.15 nucl, cyto
GmHDT1 Glyma.03 g190700 NP_001240859.1 3 867 10 288 31.46 4.64 nucl
GmHDT2 Glyma.11 g189500 XP_006591094.1 11 870 9 289 30.77 4.80 nucl
GmHDT3 Glyma.12 g084700 KRH25160.1 12 900 9 299 31.77 4.75 nucl
GmHDT4 Glyma.12 g181400 KRH26575.1 12 924 10 307 33.31 4.9 nucl
GmHDT5 Glyma.13 g319500 KRH22734.1 13 582 6 193 21.37 4.29 chlo, cyto
GmHDT6 Glyma.19 g191000 XP_003554417.1 19 882 9 293 31.91 4.61 nucl
  1. aSystematic designation given to soybean histone deacetylase genes
  2. bAccession number of Soybase (http://soybase.org/) locus ID
  3. cAccession numbers of protein sequence available at NCBI (http:// www.ncbi.nlm.nih.gov/)
  4. dSubcellular Localization of soybean histone deacetylases supported by WoLF PSORT (http://www.genscript.com/psort/wolf_psort.html)
  5. CDS, coding sequence; No., number; MW, molecular weight; PI, isoelectric point
  6. Nuc, nuclear; Cyto, cytoplasm; Chl, chloroplast; Mito, mitochondrion
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BMC Plant Biology

ISSN: 1471-2229

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