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Table 1 Overview of histone deacetylases genes identified in soybean

From: Characterization and subcellular localization of histone deacetylases and their roles in response to abiotic stresses in soybean

Gene ID

DNA attributes

Protein attributes

Gene namea

Gene locusb

Accession numberc

Chromosome

ORF (bp)

No. of exons

Length (aa)

MW (kDa)

PI

Localizationd

GmHDA1

Glyma.01 g245100

XP_003517607.1

1

1494

7

497

56.28

5.30

nucl, cyto

GmHDA2

Glyma.04 g000200

XP_003543935.1

4

1494

7

497

55.96

5.04

cyto, nucl

GmHDA3

Glyma.04 g187000

XP_006578653.1

4

1398

6

465

52.18

5.28

cyto, chlo

GmHDA4

Glyma.04 g187100

KRH63610.1

4

594

2

197

22.26

6.31

cyto

GmHDA5

Glyma.05 g012900

KRH56687.1

5

1254

14

417

45.28

7.39

nucl, cyto

GmHDA6

Glyma.05 g021400

XP_003524633.1

5

1971

14

656

73.04

5.25

cyto, nucl

GmHDA7

Glyma.05 g040600

XP_003525556.1

5

1431

6

476

53.30

5.24

nucl

GmHDA8

Glyma.05 g192600

XP_014631275.1

5

1263

9

420

45.54

6.09

chlo, nucl

GmHDA9

Glyma.06 g000100

XP_003526730.1

6

1494

7

497

55.95

5.06

nucl, cyto

GmHDA10

Glyma.06 g178700

KRH54335.1

6

705

1

234

26.74

8.88

chlo, cyto

GmHDA11

Glyma.11 g000300

XP_006590384.1

11

1494

7

497

56.12

5.22

nucl, cyto

GmHDA12

Glyma.11 g187800

XP_003538135.1

11

1290

14

429

48.94

4.98

cyto, nucl

GmHDA13

Glyma.12 g086700

XP_003539814.1

12

1290

14

429

48.94

5.06

cyto, mito

GmHDA14

Glyma.12 g188200

XP_003540263.1

12

1146

3

381

41.18

5.44

cyto, chlo

GmHDA15

Glyma.17 g078000

KRH03123.1

17

1971

14

656

72.99

5.35

cyto, nucl

GmHDA16

Glyma.17 g085700

XP_003549603.1

17

1419

6

472

52.92

5.26

nucl, chlo

GmHDA17

Glyma.17 g120900

XP_006600776.1

17

1632

17

543

59.6

5.91

nucl, cyto

GmHDA18

Glyma.17 g229600

XP_003550277.1

17

1047

13

348

38.50

6.29

cyto, nucl

GmSRT1

Glyma.04 g210000

XP_003522478.1

4

1182

11

393

43.46

9.40

chlo, mito

GmSRT2

Glyma.06 g156000

XP_003528059.2

6

1179

11

392

43.21

9.32

chlo, mito

GmSRT3

Glyma.08 g330200

KHN11152.1

8

1302

13

433

48.09

9.11

chlo, nucl

GmSRT4

Glyma.18g076300

XP_003551434.1

18

1440

14

479

53.19

9.15

nucl, cyto

GmHDT1

Glyma.03 g190700

NP_001240859.1

3

867

10

288

31.46

4.64

nucl

GmHDT2

Glyma.11 g189500

XP_006591094.1

11

870

9

289

30.77

4.80

nucl

GmHDT3

Glyma.12 g084700

KRH25160.1

12

900

9

299

31.77

4.75

nucl

GmHDT4

Glyma.12 g181400

KRH26575.1

12

924

10

307

33.31

4.9

nucl

GmHDT5

Glyma.13 g319500

KRH22734.1

13

582

6

193

21.37

4.29

chlo, cyto

GmHDT6

Glyma.19 g191000

XP_003554417.1

19

882

9

293

31.91

4.61

nucl

  1. aSystematic designation given to soybean histone deacetylase genes
  2. bAccession number of Soybase (http://soybase.org/) locus ID
  3. cAccession numbers of protein sequence available at NCBI (http:// www.ncbi.nlm.nih.gov/)
  4. dSubcellular Localization of soybean histone deacetylases supported by WoLF PSORT (http://www.genscript.com/psort/wolf_psort.html)
  5. CDS, coding sequence; No., number; MW, molecular weight; PI, isoelectric point
  6. Nuc, nuclear; Cyto, cytoplasm; Chl, chloroplast; Mito, mitochondrion
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BMC Plant Biology

ISSN: 1471-2229

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