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Table 1 Data summary of transcriptome and small RNA sequencing in A, B, R lines

From: A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

  Category CMS (A) line (S(rf1rf1)) Maintainer (B) line (N(rf1rf1)) Restorer (R) line (S(Rf1Rf1))
Transcriptome Raw reads 294,679,040 315,123,500 310,943,666
Clean reads 283,884,614 303,319,558 299,886,248
Valid ratio 96.337% 96.254% 96.444%
Gene 59,939
Small RNA Raw reads 8,398,232 10,531,059 9,237,460
Clean reads 5,972,568 6,453,537 5,991,695
Unique reads 2,523,938 2,370,576 186,637
Mapped sRNA 3,901,003 (65.32%) 4,364,067 (67.62%) 4,184,190 (69.83%)
Known miRNAs 27,413 25,404 14,878
Unannotated 1,572,274 1,566,417 1,327,258