Table 5 Gene models underlying significant SNPs and their annotations from the International Wheat Genome Sequencing Consortium reference genome assembly v1.0 of the variety Chinese spring

1B

S1B_137,128,882

TraesCS1B01G116700.2

Serine/threonine-protein kinase

Plant defense

[49]

TraesCS1B01G116700.1

S1B_144926670

TraesCS1B01G121600.2

1,3-beta glucosidase

Cell division and plant defense

[50]

S1B_144929898

TraesCS1B01G121600.3

S1B_148891914

TraesCS1B01G123200.2

Kinesin-like protein

Plant defense

[51]

TraesCS1B01G123200.1

S1B_160486821

TraesCS1B01G130000.1

Cytochrome P450

Pest and disease resistance

[52]

S1B_160486833

3B

S3B_6,951,948

TraesCS3B01G016700.1

RNA polymerase II transcription subunit

Regulation of pathways

[53]

5B

S5B_550,732,248

TraesCS5B01G372800.3

Rhomboid family protein

Regulated protein

TraesCS5B01G372800.1

TraesCS5B01G372800.2

5D

S5D_544799149

TraesCS5D01G527700.1

Lytic transglycolase

6A

S6A_431,921,921

TraesCS6A01G229000.1

SPla/RYanodine receptor (SPRY) domain protein

Increase plant immunity for Nematoda

[54]

S6A_431921934

S6A_611,857,844

TraesCS6A01G406700.1

NAC domain protein

Control biotic and abiotic stresses

[55]

6B

S6B_466695469

TraesCS6B01G258800.1

ORYGL Auxin response factor

Regulate gene expression

[56]

S6B_507468652

TraesCS6B01G281100.1

Protein of unknown function

–

S6B_576206570

TraesCS6B01G326600

Protein of unknown function

–

TraesCS6B01G326600.1

S6B_590912673

TraesCS6B01G335600.1

WHEAT Hexosyltransferase

S6B_590912695

7A

S7A_714662345

TraesCS7A01G537200

–

–

TraesCS7A01G537200.1

S7A_715781215

TraesCS7A01G538800.1

–

–

7B

S7B_18,097,824

TraesCS7B01G020500.1

–

–