Comparative transcriptome analysis of the wild-type model apomict Hieracium praealtum and its loss of parthenogenesis (lop) mutant

Table 2 Information of compared samples in each pairwise differential expression analysis^a

DE analysis (Comparison)	Accession	Tissue type	Group A		Group B		Genes targeted	Additional Files containing DE results
DE analysis (Comparison)	Accession	Tissue type	Development	Sample codes	Development	Sample code	Genes targeted	Additional Files containing DE results
1	R35	Ovules	Mature embryo sac	Wt_E	Spontaneous embryogenesis occurring	Wt_L	Associated with early stage autonomous seed development in R35	Additional file 2
2	R35	Ovules and Ovaries	Mature embryo sac	Wt_E and Ovary_5	Early to late embryos	Ovary_8, Ovary_9 and Ovary_10	Associated with maturing embryo and endosperm in R35	Additional file 3
3	lop138	Ovules	Mature embryo sacs	lop_E	Early to late embryos	lop_L	Associated with pollination-induced embryo development	Additional file 4
4	R35 and lop138	Ovules	Mature embryo sacs	Wt_E	Mature embryo sacs	Lop_E	Associated with differences between parthenogenesis capable accessions and the parthenogenesis incapable accession (lop138)	Additional file 5
	R35 and lop138	Ovules	Mature embryo sacs	Wt_E	Early to late embryos	Lop_L
	R35 and lop138	Ovules	Spontaneous embryogenesis occurring	Wt_L	Mature embryo sacs	Lop_E
	R35 and lop138	Ovules	Spontaneous embryogenesis occurring	Wt_L	Early to late embryos	Lop_L
	lop138 and A36	Ovules	Mature embryo sacs	Lop_E	Early to late embryos	Pol_L
	lop138 and A36	Ovules	Early to late embryos	Lop_L	Early to late embryos	Pol_L

^a Group A was contrasted to Group B to test for differential expression of each transcript using the DEseq (Anders and Huber 2010) R Bioconductor package

ISSN: 1471-2229