Table 4 Variability of nine hyper-variable markers and universal chloroplast DNA barcodes (rbcL and matK) in Diospyros
From: Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros
Marker | Length (bp) | Variable base sites | Informative base sites | Mean distance | Discrimination success (%) based on Distance method | ||
|---|---|---|---|---|---|---|---|
Number | Percentage (%) | Number | Percentage (%) | ||||
trnH-psbA | 1011 | 52 | 5.14 | 28 | 2.77 | 0.0178 | 80.0 |
rps16-trnQ | 2184 | 122 | 5.59 | 65 | 2.98 | 0.0183 | 60.0 |
rpoB-trnC | 885 | 46 | 5.20 | 22 | 2.49 | 0.0165 | 80.0 |
rps4-trnT-trnL | 1469 | 72 | 4.90 | 39 | 2.65 | 0.0157 | 100.0 |
ndhF | 1063 | 59 | 5.55 | 39 | 3.67 | 0.0166 | 80.0 |
ndhF-rpl32-trnL | 2143 | 122 | 5.69 | 54 | 2.52 | 0.0182 | 100.0 |
ycf1a | 2141 | 123 | 5.74 | 60 | 2.80 | 0.0181 | 100.0 |
ycf1b | 1505 | 88 | 5.85 | 41 | 2.72 | 0.0177 | 80.0 |
Combined | 12,401 | 684 | 5.52 | 348 | 2.81 | 0.0176 | 100.0 |
rbcL | 1428 | 26 | 1.82 | 15 | 1.05 | 0.0057 | 40.0 |
matK | 1512 | 46 | 3.04 | 24 | 1.59 | 0.0096 | 80.0 |