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Table 4 Variability of nine hyper-variable markers and universal chloroplast DNA barcodes (rbcL and matK) in Diospyros

From: Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros

Marker Length (bp) Variable base sites Informative base sites Mean distance Discrimination success (%) based on Distance method
Number Percentage (%) Number Percentage (%)
trnH-psbA 1011 52 5.14 28 2.77 0.0178 80.0
rps16-trnQ 2184 122 5.59 65 2.98 0.0183 60.0
rpoB-trnC 885 46 5.20 22 2.49 0.0165 80.0
rps4-trnT-trnL 1469 72 4.90 39 2.65 0.0157 100.0
ndhF 1063 59 5.55 39 3.67 0.0166 80.0
ndhF-rpl32-trnL 2143 122 5.69 54 2.52 0.0182 100.0
ycf1a 2141 123 5.74 60 2.80 0.0181 100.0
ycf1b 1505 88 5.85 41 2.72 0.0177 80.0
Combined 12,401 684 5.52 348 2.81 0.0176 100.0
rbcL 1428 26 1.82 15 1.05 0.0057 40.0
matK 1512 46 3.04 24 1.59 0.0096 80.0